BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1738.p
         (468 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthi...   460   e-131

>gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score =  460 bits (1183), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/439 (55%), Positives = 303/439 (69%), Gaps = 9/439 (2%)

Query: 33  RDTLAVAYSGGLDSTVLLQVAAQWAQDSGGQVVALHVHHGLSANADAWLAHAQAFCAQRG 92
           +  +A+AYSGGLDS  LL +   +      ++ A HVHHGLS NAD WLAH +A CA  G
Sbjct: 23  KAKIALAYSGGLDSAALLHLLHAYGLAQQIEIFAFHVHHGLSPNADDWLAHCRAQCAALG 82

Query: 93  VLCASERVQVANVAETGIEEAARLARYAALGRLCRQHGAPLLLTAHHLDDQAETVLLQLL 152
           V+  + +VQV    + GIEEAAR +RYAALG +CR HG PLLLTAHHLDDQAETVLLQLL
Sbjct: 83  VVFDARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAETVLLQLL 142

Query: 153 RGSGLAGMSGMDHCNTAPGLLGDAHTLVVRPFLGVPRAQLEAVARALALVWIEDESNQDP 212
           RGSG+AG+SGMD  N A  LLGDA+ L+ RP L V R  L+A   A A+ ++EDESN DP
Sbjct: 143 RGSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQFVEDESNLDP 202

Query: 213 RYTRNALRHQVMPTLGQVFPGYQQRLARAAGHAQGAQELLREVAQQDLAQCRQDDHLLMP 272
           RY RNALRHQVMP L + FPG+QQR AR A HAQ AQ LL E+A +DL QC   + + + 
Sbjct: 203 RYARNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDLQQCLDGECVDVT 262

Query: 273 ALRGLSEQRFLNLMRHWFALRGMRMPSAAWMQEMRSQLLQADVEAQLCVSHPDGEVHRYR 332
            LR  S  R  N++R+WF LRG+RMPS AW+ EMR+QLL+A  +AQLCV+H D  + R+R
Sbjct: 263 KLRQFSADRIDNMLRYWFGLRGVRMPSTAWLNEMRTQLLEAKHDAQLCVTHADCHIRRHR 322

Query: 333 ERVFLAPRRIAPD--EGASLSLRWEGQAQVRVAAFYGTLHFDSIASDEVRPGLDATWLRS 390
           +RV++ P +  PD       S  W+G+A +   +F GTL+F     D+   G+ A WL +
Sbjct: 323 DRVYITP-KFDPDLLLQPPRSFNWQGEASLHFPSFGGTLYF-----DQAEQGIAAEWLGA 376

Query: 391 QALLVCGRSGGERIKLGVNRPARSLKQQYQSADVPAWERPFLPLVWAGETLLFAAGIGMD 450
           Q LL+  RSGGER+K   NRP +SLK QYQ+ DVPAWER  LPLV+AG+ LLFAAGIGMD
Sbjct: 377 QTLLIQLRSGGERLKPAWNRPTKSLKYQYQACDVPAWERERLPLVFAGKQLLFAAGIGMD 436

Query: 451 SAHLVT-SGERIALRWQPD 468
              L T +G  I LRWQ D
Sbjct: 437 CHPLNTETGGNIQLRWQFD 455


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,096,604
Number of extensions: 44420
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 381
Effective length of database: 899,382
Effective search space: 342664542
Effective search space used: 342664542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)