BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1736.p
         (219 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980259|ref|YP_001353797.1| DNA-3-methyladenine glycosylase...   351   2e-98
gi|152981560|ref|YP_001351825.1| methylated-DNA-[protein]-cystei...    65   3e-12

>gi|152980259|ref|YP_001353797.1| DNA-3-methyladenine glycosylase II
           [Janthinobacterium sp. Marseille]
          Length = 215

 Score =  351 bits (901), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 167/207 (80%), Positives = 188/207 (90%), Gaps = 1/207 (0%)

Query: 11  DPSLIVPAYWEDAKAELMKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQISTKAA 70
           D + I+PAYWE+AKAELMKRDRI+RK+IPQFGDL L  RG+AF+TLARS+IGQQISTKAA
Sbjct: 8   DETRILPAYWEEAKAELMKRDRILRKLIPQFGDLHLVGRGEAFSTLARSIIGQQISTKAA 67

Query: 71  NAVWQRFLQACPRCTPGQVIRTGPEGLAACGLSKRKAEYILDLAAHFKAKTVHPDKWAEM 130
           ++VWQRFL+ CP+CTP QVI+ G + LA CGLSKRKAEYI DLA HFKAK V+ DKWAEM
Sbjct: 68  DSVWQRFLEVCPKCTPAQVIKAG-DKLATCGLSKRKAEYIFDLADHFKAKRVNCDKWAEM 126

Query: 131 EDEAVIAEMIQIRGIGRWTAEMFLIFNLLRPNVLPLDDLGLLKGISISYFSGEPVSRSDA 190
           EDE VIAE+IQIRGIGRWTAEMFLIFNLLRPN+LPLDDLGLL GIS +YFSGEPVSRSDA
Sbjct: 127 EDEEVIAELIQIRGIGRWTAEMFLIFNLLRPNILPLDDLGLLAGISRNYFSGEPVSRSDA 186

Query: 191 REVAANWEPWRTVATWYLWRSLDPLPS 217
           REVAANWEP+RTVATWYLWRSLDP+ +
Sbjct: 187 REVAANWEPYRTVATWYLWRSLDPVEA 213


>gi|152981560|ref|YP_001351825.1| methylated-DNA-[protein]-cysteine
           S-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 499

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 9   DADPSLIVPAYWEDAKAELMKRDRIMRKIIPQFGDLQLTVRGDAFTTLARSVIGQQISTK 68
           DA+P +I         A  +  D ++ + I     L++    D F    R+V+GQQ+S  
Sbjct: 295 DANPEII---------AAHLSADALLAQQIRLTPGLRVPGTFDTFELAIRAVLGQQVSVA 345

Query: 69  AANAVWQRFLQAC--PRCTPGQVI-RTGPEG----------LAACGLSKRKAEYILDLAA 115
            A  V  R ++A   P  TP   I R  P            +AA G+   +A+ I ++A 
Sbjct: 346 GATTVSGRLVKAFGEPADTPFIGINRHFPTAERLAAADIGEIAALGMPGSRAQTIQNVAR 405

Query: 116 HFKAKTVHPDKWAEMEDEAVIAEMIQIRGIGRWTAEMFLIFNLLRPNVLPLDDLGLLKGI 175
                 +     A +++   ++ +  +RGIG WTA+   +  L  P+  P  DLGL K  
Sbjct: 406 FAVQGGLQMKPGASLDE--CVSSLKTVRGIGEWTAQYVAMRALRFPDAFPTGDLGLQKA- 462

Query: 176 SISYFSGEPVSRSDAREVAANWEPWRTVATWYLWRSL 212
           ++    G  ++       AA W PWR      LW SL
Sbjct: 463 AVEVAGGTRLTEKQLLLRAAGWSPWRAYTALLLWHSL 499


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 513,490
Number of extensions: 19573
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 139
Effective length of database: 925,261
Effective search space: 128611279
Effective search space used: 128611279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)