BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1735.p
         (463 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980026|ref|YP_001353798.1| cysteinyl-tRNA synthetase [Jant...   761   0.0  

>gi|152980026|ref|YP_001353798.1| cysteinyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 464

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/464 (78%), Positives = 398/464 (85%), Gaps = 1/464 (0%)

Query: 1   MSELKIYNTLARDKQTFSPIEPGKVRLYVCGMTVYDYCHIGHARVLVVFDMVQRWLRASG 60
           MS LKIYNTLAR+KQ F+PIEPGKVR+YVCGMTVYDYCHIGHARV+VVFD+VQRWLRASG
Sbjct: 1   MSALKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60

Query: 61  YAVTYVRNITDIDDKIIKRALENGETIAQLTNRFIDAMNEDAAALGVQRPDHEPRATKYV 120
           Y V YVRNITDIDDKIIKRA ENGE+I+ LT RFIDAM+EDAAALGVQ+PDHEPRAT YV
Sbjct: 61  YEVNYVRNITDIDDKIIKRAAENGESISALTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120

Query: 121 PQMLELIGKLEKNGLAYKASDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180
           PQML LI  LE+NGLAYK+SDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP
Sbjct: 121 PQMLGLIEALERNGLAYKSSDGDVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTGKRDP 180

Query: 181 LDFVLWKAAKPNEPSEAKWDSPWGCGRPGWHIECSAMSSDLLGDHFDIHGGGQDLQFPHH 240
           LDFVLWK++K  EP E KW S WG GRPGWHIECSAM+ +LLG  FDIHGGG DLQFPHH
Sbjct: 181 LDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADLQFPHH 240

Query: 241 ENEIAQSEGAHQHTFVNYWMHNGFVRIDNEKMSKSLGNFFTIRDVLKKYDPEVLRFFILR 300
           ENEIAQSEGA QHTFVNYWMHNGFVR+DNEKMSKSLGNFFTIR+VL KYD EV+RFFILR
Sbjct: 241 ENEIAQSEGASQHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLAKYDSEVVRFFILR 300

Query: 301 AHYRSPLNYSDAHLDDARQALTRLYTALKDVPPEAGGLLVDEAHAQKFTEALNDDFNTPV 360
           AHYRS LNYSDAHLDDAR ALTR+YTALK V P+   L + EAHA +F EA+NDDFNTP+
Sbjct: 301 AHYRSQLNYSDAHLDDARNALTRMYTALKGVAPDQAALDMTEAHALRFAEAMNDDFNTPL 360

Query: 361 AMAVLFELVNEVNRSRSPVQARQLKALAGILGLLQRAPDDYLKGGVA-AVDGMGEAEIEA 419
           A+AVLFEL NE+N+++SP  ARQL  LAGI+GLLQR    +L  G+A   DG  E  +  
Sbjct: 361 AVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAGLANGEDGEMETFVVE 420

Query: 420 LIAARKAAKAGKDFAAADRIRAELTAAGIVLEDKPGGLTEWRRA 463
            I AR  AK  K+FA ADRIRAEL   GI+LEDKPGGLTEWRRA
Sbjct: 421 QIEARVNAKKAKNFAEADRIRAELLEKGIILEDKPGGLTEWRRA 464


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,095,541
Number of extensions: 45102
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 376
Effective length of database: 899,382
Effective search space: 338167632
Effective search space used: 338167632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)