BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1732.p
         (399 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982143|ref|YP_001352557.1| hypothetical protein mma_0867 [...   494   e-141

>gi|152982143|ref|YP_001352557.1| hypothetical protein mma_0867
           [Janthinobacterium sp. Marseille]
          Length = 393

 Score =  494 bits (1271), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 229/394 (58%), Positives = 304/394 (77%), Gaps = 4/394 (1%)

Query: 7   MPAMGSVASSSSIPPQGNTAGAPTAKPDPEALLIDIYKDLGANRLREAQAKADALVAAYP 66
           M    SV S+ ++   G+  G P A+ DPE +LID+YK L ANRLR+AQAKADALVAAYP
Sbjct: 1   MLVAASVMSTPALA-NGSKPGVP-ARLDPEIMLIDVYKALAANRLRDAQAKADALVAAYP 58

Query: 67  TFRLGHLVRGDLLLMHARPVRNFGAMADGPADKLQELRDEAMVRIRSLQEKPDPNLIPKS 126
           TFRLGHLVRGDLLL+H RP++ FGA  + PAD+L  LRDEA+VR++SL+E+PDP+++P++
Sbjct: 59  TFRLGHLVRGDLLLLHTRPIKTFGAAPNAPADRLDNLRDEAIVRLKSLRERPDPDMVPRA 118

Query: 127 VLQVGDDQKNVLVVDTTRSRMYVYENQDGDLKYMTDYYISQGRLGANKTKSGDQRTPIGV 186
           +LQ+ +DQKNVL+VD  RSR+YVY+  +G  K  +DYYISQGRLG NK K GDQ+TP+GV
Sbjct: 119 ILQMREDQKNVLLVDAKRSRLYVYQRVNGQFKLTSDYYISQGRLGVNKFKEGDQKTPLGV 178

Query: 187 YYVNNRIPGPKLPDFYGTGALPLSYPNEWDKRNGRSGYGIWLHGTPSDNFSRPPLSSDGC 246
           YY+  R+PG +LP+FYG GALP++YPNEWDK NGRSG GIWLHGTPSD++SRPPLSSDGC
Sbjct: 179 YYITARLPGARLPEFYGPGALPINYPNEWDKANGRSGSGIWLHGTPSDSYSRPPLSSDGC 238

Query: 247 VVLANPDLQSLYSTAEVGKTVVVISQNVQFVNKNSLTKERDAASAMLEQWSQSLEDADAD 306
           VVL NPDL+ L ++ E+G T V+IS++++FV+K     ++ AA+ MLE W   LE  D +
Sbjct: 239 VVLTNPDLKELSASVEIGNTPVIISEDLKFVSKAKWEADKLAANKMLEAWRADLETTDPE 298

Query: 307 KVLSYYSPEFRSAQGENLATWFGRQQKSLNGARYTSVKLRDVSLFRYPGAPE--DMIVST 364
            +  +YS  F++ +G+NL+ W  + Q+S  GAR  SV LRDV+LFRYP   +  ++IV+ 
Sbjct: 299 SLRRHYSRNFKAMRGQNLSNWLDKVQQSNLGARKISVSLRDVTLFRYPDQKDQKELIVAA 358

Query: 365 FTQESAVGKSKNAIRKRQYWVREGSQWKIIYEGN 398
           FTQE+ +GK K+  RKRQYW +EG+QWKI+ E N
Sbjct: 359 FTQEATIGKGKHVTRKRQYWAKEGAQWKIVSEVN 392


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 988,862
Number of extensions: 42632
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 314
Effective length of database: 906,776
Effective search space: 284727664
Effective search space used: 284727664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)