BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1731.p
         (189 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981407|ref|YP_001353799.1| peptidyl-prolyl cis-trans isome...   277   3e-76
gi|152981419|ref|YP_001353800.1| peptidyl-prolyl cis-trans isome...   219   9e-59

>gi|152981407|ref|YP_001353799.1| peptidyl-prolyl cis-trans
           isomerase B [Janthinobacterium sp. Marseille]
          Length = 192

 Score =  277 bits (708), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 158/192 (82%), Gaps = 5/192 (2%)

Query: 1   MILSRRHLLRMAAALSLSTTLAAPVLAADAPHVLLKTSMGNITLELNPEKAPVSVDNFLK 60
           M  SRR  L M AA+SLS  L     AADAP VLLKTSMG+I LELN EKAP SV+NF++
Sbjct: 1   MKFSRRQALAMVAAVSLSGMLQL-AQAADAPQVLLKTSMGDIVLELNQEKAPKSVENFVQ 59

Query: 61  YVKKGQYNGTVFHRVINGFMIQGGGYDQNMREKPTDAPIKNEANNGLKNEVYTVAMARTA 120
           YVK GQYNGT+FHRVI+GFMIQGGG+D++M+EK T API+NEA NGLKN++YT+AMART+
Sbjct: 60  YVKSGQYNGTIFHRVIDGFMIQGGGFDKDMKEKATRAPIQNEAANGLKNDIYTIAMARTS 119

Query: 121 APHSATAQFFINVADNRFLNYPGQDGWGYAVFGKVIAGADVVDKIKQV----RTGAGDVP 176
           APHSATAQFFIN A+N  LNYP +DGWGYAVFGKVI G++VVDKIK V    R G  +VP
Sbjct: 120 APHSATAQFFINTANNSMLNYPSRDGWGYAVFGKVIKGSEVVDKIKNVSTGNRGGHQNVP 179

Query: 177 TTPVVIESATVI 188
           TTPV+IESATVI
Sbjct: 180 TTPVIIESATVI 191


>gi|152981419|ref|YP_001353800.1| peptidyl-prolyl cis-trans
           isomerase B [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  219 bits (558), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 126/160 (78%), Gaps = 4/160 (2%)

Query: 33  VLLKTSMGNITLELNPEKAPVSVDNFLKYVKKGQYNGTVFHRVINGFMIQGGGYDQNMRE 92
           VLL T+ GNIT+EL+ EKAP +V+NFL YV  G Y GT+FHRVI+GFMIQGGG++  M +
Sbjct: 3   VLLTTNHGNITIELDAEKAPKTVENFLAYVNSGHYAGTIFHRVIDGFMIQGGGFEPGMTQ 62

Query: 93  KPTDAPIKNEANNGLKNEVYTVAMARTAAPHSATAQFFINVADNRFLNYPGQDGWGYAVF 152
           KPT+ P++NEA NGLKN +YT+AMART+APHSA+AQFFINV DN FL+YPGQDGWGY VF
Sbjct: 63  KPTNEPVENEAKNGLKNGMYTLAMARTSAPHSASAQFFINVNDNSFLDYPGQDGWGYCVF 122

Query: 153 GKVIAGADVVDKIKQVRTGA----GDVPTTPVVIESATVI 188
           GKV  G DVV+KI+ V+T       DVP   VVIE A VI
Sbjct: 123 GKVTDGIDVVEKIRAVKTTRSGMFADVPVDDVVIEKAEVI 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 394,589
Number of extensions: 16196
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 111
Effective length of database: 932,655
Effective search space: 103524705
Effective search space used: 103524705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)