BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1730.p
         (162 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981419|ref|YP_001353800.1| peptidyl-prolyl cis-trans isome...   291   1e-80
gi|152981407|ref|YP_001353799.1| peptidyl-prolyl cis-trans isome...   230   3e-62

>gi|152981419|ref|YP_001353800.1| peptidyl-prolyl cis-trans
           isomerase B [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  291 bits (746), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 149/162 (91%)

Query: 1   MAVLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGM 60
           MAVLLTTNHG I IELDAEKAPKTVENFLAYVN+GHY GTIFHRVIDGFMIQGGGFEPGM
Sbjct: 1   MAVLLTTNHGNITIELDAEKAPKTVENFLAYVNSGHYAGTIFHRVIDGFMIQGGGFEPGM 60

Query: 61  KQKETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYC 120
            QK T EP+ENEAKNGLKN  YTLAMART+APHSASAQFFINV +NSFLDYPGQDGWGYC
Sbjct: 61  TQKPTNEPVENEAKNGLKNGMYTLAMARTSAPHSASAQFFINVNDNSFLDYPGQDGWGYC 120

Query: 121 VFGKVVEGTEVVDKIKGVKTTRTGMFADVPAEDVLIEKAEVV 162
           VFGKV +G +VV+KI+ VKTTR+GMFADVP +DV+IEKAEV+
Sbjct: 121 VFGKVTDGIDVVEKIRAVKTTRSGMFADVPVDDVVIEKAEVI 162


>gi|152981407|ref|YP_001353799.1| peptidyl-prolyl cis-trans
           isomerase B [Janthinobacterium sp. Marseille]
          Length = 192

 Score =  230 bits (586), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 128/160 (80%)

Query: 3   VLLTTNHGTIKIELDAEKAPKTVENFLAYVNAGHYNGTIFHRVIDGFMIQGGGFEPGMKQ 62
           VLL T+ G I +EL+ EKAPK+VENF+ YV +G YNGTIFHRVIDGFMIQGGGF+  MK+
Sbjct: 32  VLLKTSMGDIVLELNQEKAPKSVENFVQYVKSGQYNGTIFHRVIDGFMIQGGGFDKDMKE 91

Query: 63  KETREPIENEAKNGLKNEPYTLAMARTAAPHSASAQFFINVKNNSFLDYPGQDGWGYCVF 122
           K TR PI+NEA NGLKN+ YT+AMART+APHSA+AQFFIN  NNS L+YP +DGWGY VF
Sbjct: 92  KATRAPIQNEAANGLKNDIYTIAMARTSAPHSATAQFFINTANNSMLNYPSRDGWGYAVF 151

Query: 123 GKVVEGTEVVDKIKGVKTTRTGMFADVPAEDVLIEKAEVV 162
           GKV++G+EVVDKIK V T   G   +VP   V+IE A V+
Sbjct: 152 GKVIKGSEVVDKIKNVSTGNRGGHQNVPTTPVIIESATVI 191


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 379,511
Number of extensions: 15080
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 162
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 86
Effective length of database: 940,049
Effective search space: 80844214
Effective search space used: 80844214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)