BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1729.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979937|ref|YP_001353801.1| UDP-2,3-diacylglucosamine hydro...   303   6e-84

>gi|152979937|ref|YP_001353801.1| UDP-2,3-diacylglucosamine
           hydrolase [Janthinobacterium sp. Marseille]
          Length = 269

 Score =  303 bits (776), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 152/257 (59%), Positives = 184/257 (71%), Gaps = 2/257 (0%)

Query: 8   QKAQPTVA-LFVSDLHLQAGLPRTTEAFLAFLQSHAVQTQQLYLLGDVFEYWAGDDDLTA 66
            +AQP +A LFVSDLHLQA +PRTT+AF  FLQ+ A+ T+QLYLLGD+FE WAGDDDL  
Sbjct: 11  NQAQPAMAALFVSDLHLQAAMPRTTQAFFNFLQNQALHTKQLYLLGDIFEAWAGDDDLDD 70

Query: 67  PYNQLIADALKTVQVQGVQLYWMAGNRDFLVGQGFATAAGLTLLDDPHVVTLAGRTLALA 126
           PY+Q + +ALK V   GV+++WMAGNRDFLVGQ FA   G++LL DP V +LAGR L L 
Sbjct: 71  PYHQQVVNALKKVSASGVEVFWMAGNRDFLVGQKFAEVTGISLLPDPFVTSLAGRLLVLT 130

Query: 127 HGDAQCTDDLAYMAFRAQVRQPAYQQQFLAMPLAQRKAIIEGIRKNSQDANQSKEMAIMD 186
           HGDA CTDD AYM FRAQVRQ  +QQ FLA+PLAQRKAIIE +R  S+ A + K   IMD
Sbjct: 131 HGDAYCTDDAAYMEFRAQVRQAEWQQNFLALPLAQRKAIIENLRAGSRAAQRDKSYDIMD 190

Query: 187 VNAGAIDALFAQTGTDVLIHGHTHRPALHRLGEGEQCKLRYVLPDWEYDVAT-PRGGWIS 245
           VN  AI  LF  + +  +IHGHTHRPA H+       +LRYVL DW+ D  T  RG W++
Sbjct: 191 VNQDAIAGLFRHSRSATMIHGHTHRPARHQHQVDGAERLRYVLSDWDLDHTTASRGDWLA 250

Query: 246 LTADGVLHRHDVDGHEI 262
           L   G +HR  +DG EI
Sbjct: 251 LDTAGEIHRFTLDGTEI 267


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 645,780
Number of extensions: 26875
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)