BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1727.p
         (245 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthino...   420   e-119
gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthino...    78   6e-16

>gi|152981297|ref|YP_001353804.1| RNA methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 247

 Score =  420 bits (1080), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/243 (83%), Positives = 224/243 (92%)

Query: 1   MKSKMIFGFHAVTSRIRHEASSVEEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLG 60
           MKSKMIFGFHAVT+R+RHEASSVEEIY+DA R D+RM DL+ AA+ A VRII ADD RL 
Sbjct: 1   MKSKMIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLS 60

Query: 61  AMVGTRRHQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAG 120
           ++VGTRRHQGVVAKA  LSLAR LDELLDA+ GPPLLL+LDGITDPHNLGACLRVADGAG
Sbjct: 61  SIVGTRRHQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAG 120

Query: 121 AHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEK 180
           AHAVIAPKDRAVGLNATA KV+SGA+DTVPYITVTNLART+R+LKER + +IGT+DD+EK
Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEK 180

Query: 181 GLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARR 240
           GLYE DF+GP ALVMGSEGEGMRRLTRETCDVLV IPMFGSVESLNVSVASGVCLYEARR
Sbjct: 181 GLYEADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARR 240

Query: 241 QRL 243
           QR+
Sbjct: 241 QRI 243


>gi|152981475|ref|YP_001353733.1| RNA methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 264

 Score = 77.8 bits (190), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 94  PPLL----LILDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAMKVSSGASDTV 149
           PP L    ++LD + DP N G+ +R A  AG   V          +   ++   GA   +
Sbjct: 112 PPRLTQSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLL 171

Query: 150 PYITVTNLARTMRDLKERG-VWIIGTSDDAEKGLYEGDFTGPTALVMGSEGEGMRR--LT 206
                 +L+    DL  R  + +I TS  AEK LYE D   P A + G EG+G+    L 
Sbjct: 172 EIFEGVDLS----DLLGRADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLA 227

Query: 207 RETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQR 242
           R T  +  +IP  G +ESLNV+ +S VC +E  RQR
Sbjct: 228 RATHRI--SIPHLGDIESLNVAASSAVCFFEQLRQR 261


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 549,657
Number of extensions: 22537
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 164
Effective length of database: 921,564
Effective search space: 151136496
Effective search space used: 151136496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)