BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1726.p
         (829 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981195|ref|YP_001353805.1| exoribonuclease RNAse R [Janthi...  1337   0.0  

>gi|152981195|ref|YP_001353805.1| exoribonuclease RNAse R
           [Janthinobacterium sp. Marseille]
          Length = 816

 Score = 1337 bits (3461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/829 (79%), Positives = 734/829 (88%), Gaps = 13/829 (1%)

Query: 1   LSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60
           +SQ+ Y+IPSREEILGILRT++G+ +A+ LA ALGVKP+EMDGL RRLNAMERDGQIKPD
Sbjct: 1   MSQYSYTIPSREEILGILRTATGSHDASTLATALGVKPDEMDGLMRRLNAMERDGQIKPD 60

Query: 61  RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGTDDLFLPEKEMQKVMHGDRVQARIVGT 120
           RAG+Y+L HS +FI GRVSSHRDGFGFL+PDD + D+FLPEKEMQKV+HGDRVQARI+GT
Sbjct: 61  RAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120

Query: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDVLLAGPPGKAKAGQVV 180
           DRRGRPEGTIVEVV RAN+HVIGRLLNENGVWVVAPEDKRIG D++LAG PGKAK GQVV
Sbjct: 121 DRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKRIGQDIMLAGSPGKAKTGQVV 180

Query: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLSAKLPSEV 240
           SVELTE PSR++QPVGKIVE+LGDIDDPGMEIEIAVRKYGVPHEFS+AAKK +AKLP+EV
Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAKKAAAKLPNEV 240

Query: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRAKGYRLIVAIADVSHYVKPN 300
           +A DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGRA G+RLIVAIADVS+YVKPN
Sbjct: 241 RAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300

Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360
           +ALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVITAKGEIKAYQ
Sbjct: 301 EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITAKGEIKAYQ 360

Query: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID 420
           FYPAVIHSAARLTYTEVA+IL NTKG EA +R  LVPHL +LY V+QALL AR ARGAID
Sbjct: 361 FYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLLNLYGVYQALLQARHARGAID 420

Query: 421 FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG 480
           FETTETYIVCN  GKI++ILPRTRN+AH+LIEECMLAANVCAADLL+RH H +LYR+HA 
Sbjct: 421 FETTETYIVCNEVGKIQQILPRTRNEAHKLIEECMLAANVCAADLLQRHKHHSLYRVHAL 480

Query: 481 PTKEKLTQLRTFLKQVGLHLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY 540
           PTKEKL Q+RTFLKQVGL+LGGGD P+ASDYAELMPK+K RPDA+L+QTMLLRSMQQAVY
Sbjct: 481 PTKEKLNQVRTFLKQVGLNLGGGDKPTASDYAELMPKIKNRPDALLLQTMLLRSMQQAVY 540

Query: 541 SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA 600
           SP+NIGHFGLSYE+YAHFTSPIRRYPDLLTHRAIKA+LQGKRYEP+G+D+  LNT +SPA
Sbjct: 541 SPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYEPRGMDTSTLNTMLSPA 600

Query: 601 ARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD 660
           ARK    + A DKA GK+ + E  LAIWEALG+HCSANERRADEASRDVEAWLKCYFIRD
Sbjct: 601 ARK----KHAQDKAEGKQ-KSEGDLAIWEALGIHCSANERRADEASRDVEAWLKCYFIRD 655

Query: 661 KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ 720
           KLGEEFTG ISGVATFGIFVQLD+L+IEG+VHVTELGAD+F++DEARHELRGERTGIRYQ
Sbjct: 656 KLGEEFTGVISGVATFGIFVQLDSLFIEGMVHVTELGADHFKFDEARHELRGERTGIRYQ 715

Query: 721 LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLIKNEAKRAETAARGKSAGSKPAARGKKA 780
           LTDRVTVQVSRVDLDARKIDL LVNEPGIRT++KNEA+RA+   + +S  ++ +  GK A
Sbjct: 716 LTDRVTVQVSRVDLDARKIDLRLVNEPGIRTVLKNEARRADNEHQQRSKKAEKSVAGKTA 775

Query: 781 AASKPATAAAKPKGGAKAKAGSTTHARTGEADRKRAAAKGFNKGGKKKR 829
             +    A A    G KAKA      RT     K+ A     K  KKKR
Sbjct: 776 TKATAPAATAP---GKKAKA-----KRTPATPNKQRAPAVHPKSSKKKR 816


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,860,034
Number of extensions: 80637
Number of successful extensions: 286
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 829
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 738
Effective length of database: 884,594
Effective search space: 652830372
Effective search space used: 652830372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)