BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1721.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 512 e-146 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 503 e-143 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 493 e-140 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 453 e-128 gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis pro... 452 e-128 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 512 bits (1318), Expect = e-146, Method: Compositional matrix adjust. Identities = 295/515 (57%), Positives = 366/515 (71%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++ N+ I TRL GFA +L LM M+T +G+ RLQEV D M L KERL + Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLS 60 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINE 120 +++VN R +A+AK E Q F+++Q+ + NEL K ++ + + + Sbjct: 61 AVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVV 120 Query: 121 RRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQ 180 R + + VFK K G A+ +++EK+LP+ Y +I+ + + + I Sbjct: 121 ARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTS 180 Query: 181 IDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVR 240 I F + R ++IGL A+ LGV AW + SIT PL++AV VA VA G L IEV Sbjct: 181 IQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVS 240 Query: 241 GGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEE 300 DETGQLM ALKDM + L VS VR GT+TIATAS +IASGNLDLS RTE+QASSL E Sbjct: 241 SNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGE 300 Query: 301 TASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDI 360 TA++M +LTSTV+QNADNARQAN LA SAS+VAV+GGSVVSEVV TM SIN S+RKIVDI Sbjct: 301 TAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDI 360 Query: 361 IAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDS 420 I+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LIGDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDS 420 Query: 421 VGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEAT 480 VGKVEAGSKLV +AG+TM+E+V SV+RVTDI+AEI +ASQEQS GI+QVNQAI MD+ T Sbjct: 421 VGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVT 480 Query: 481 QQNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 QQNAALVE+AAAAA +Q+QA +L+ VS F+L G Sbjct: 481 QQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDG 515 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 503 bits (1294), Expect = e-143, Method: Compositional matrix adjust. Identities = 303/520 (58%), Positives = 372/520 (71%), Gaps = 12/520 (2%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++ N+ IG RLGL FA IL LMA + +GVWRLQ+V++ M +A KERL + +Y Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHM-EEAAHKERLTHEWYL 59 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQI---MSVISK-NNELVKRMDELFTDEAGRAALN 116 N R A ++ D E QK +++++ ISK NE+V L E G+ ++ Sbjct: 60 GNVANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVA----LIHSEEGKKLMS 115 Query: 117 AINERRKSVLEANTEVFKEKDAGNEQAAR---KVVDEKLLPSTQLYIAAIEKLASMQAER 173 + E+R + ++ +VFK K N A K+V+ K+ P+ Y +++ + S Q Sbjct: 116 VVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVI 175 Query: 174 IQILTAQIDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQL 233 Q A +D L+ + R ++I LG +AL+L LAW ++RSIT PL AV VA VA G L Sbjct: 176 FQRAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDL 235 Query: 234 DNCIEVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQ 293 N I+ DETGQL+ AL+DMN+ LV VS+VR G +TIATAS +IA+GNLDLS RTE+ Sbjct: 236 RNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEE 295 Query: 294 QASSLEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINAS 353 QASSLEETAS+MEELTSTVKQNADNARQANQLA SAS VA +GG VVS VV TM INAS Sbjct: 296 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINAS 355 Query: 354 SRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEI 413 ++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEI Sbjct: 356 AKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 415 Query: 414 KELIGDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAI 473 K LIGDSV KVE GSKLV +AG TMDEVV SV+ VTDI++EI +ASQEQS GIEQVNQAI Sbjct: 416 KTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAI 475 Query: 474 NLMDEATQQNAALVEQAAAAARQMQEQAASLSETVSVFRL 513 MD+ TQQNAALVE+AAAAA + EQAA L+E VSVF+L Sbjct: 476 GQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 493 bits (1269), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/511 (54%), Positives = 352/511 (68%) Query: 3 MKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYKSI 62 NM IG RL LGF +LAL I G+ +L VS + +M+ + KER+V+ + Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 63 EVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINERR 122 + +I R + AK+ D +F + ++ E++++++ L + + I + R Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKILDVR 123 Query: 123 KSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQID 182 KS L V K K G E A K D LP+ + + ++ +++ TAQ+ Sbjct: 124 KSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLS 183 Query: 183 DLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLDNCIEVRGG 242 D+ + + ++ L + L G+ AW +T IT PL AV+ A RVA G L N I+ Sbjct: 184 DVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESK 243 Query: 243 DETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLEETA 302 DE GQL+ ALKDMN+ L IV VR GT+TI TAS EIA+GNLDLS RTEQQASSLEETA Sbjct: 244 DECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETA 303 Query: 303 SAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVDIIA 362 S+MEELTSTVKQNADNARQANQLA SASEVA++GG VVS+VV TM SIN SSRKIVDII+ Sbjct: 304 SSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIIS 363 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVG 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSASAAKEIK LIGDSVG Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVG 423 Query: 423 KVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEATQQ 482 KV+ G+KLV +AGATMDE+V S+RRVTDI+ EI++ASQEQS GIEQ+NQAI MD TQQ Sbjct: 424 KVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQ 483 Query: 483 NAALVEQAAAAARQMQEQAASLSETVSVFRL 513 NA+LVE+AAAAA MQ+QA L + V F+L Sbjct: 484 NASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust. Identities = 285/523 (54%), Positives = 366/523 (69%), Gaps = 20/523 (3%) Query: 3 MKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMV---NDALVKERLVNTFY 59 MKN+ IG RL L F +++ L+ ++ + R + LNDA+ D K L N Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTR---IGGLNDAISEVDGDRYPKTVLANVMK 57 Query: 60 KSIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISK-----NNELVKRMDELFTDEAGRAA 114 ++ +I +N + +K Q ++ I K NN LV+ +++ E GR Sbjct: 58 D----DLNQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVE-LEKTVRSERGRQT 112 Query: 115 LNAINERRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERI 174 + + R L + K AG + A ++ ++ P+ Y+A+I+KL Q E + Sbjct: 113 IAGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELM 172 Query: 175 QILTAQID-DLFQTARKVMIGL-GLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQ 232 + A+ + QT +++IG+ ++A+L+ + A TRSIT PL +AV +A +VA G Sbjct: 173 KKSGAEANAKASQT--QLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGD 230 Query: 233 LDNCIEVRGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTE 292 L I V DETGQL+ ALKDMNE L+ IV++VR GTDTIA+AS +IA+GNLDLS RTE Sbjct: 231 LTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTE 290 Query: 293 QQASSLEETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINA 352 QQASSLEETAS+MEELTSTVKQNA+NARQ+NQLA SASEVAV+GG+VVS+VV TMG IN Sbjct: 291 QQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIND 350 Query: 353 SSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE 412 S++KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE Sbjct: 351 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE 410 Query: 413 IKELIGDSVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQA 472 IKELIGDSV KV GS+LV+ AGATM EVV SV+RVTDI++EI++ASQEQ+DGIEQ+NQA Sbjct: 411 IKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQA 470 Query: 473 INLMDEATQQNAALVEQAAAAARQMQEQAASLSETVSVFRLQG 515 + MD+ TQQNAALVE+AAAAA +Q QA+ LS+ V VF+L G Sbjct: 471 VMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG 513 >gi|152981471|ref|YP_001352860.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 452 bits (1164), Expect = e-128, Method: Compositional matrix adjust. Identities = 274/514 (53%), Positives = 367/514 (71%), Gaps = 1/514 (0%) Query: 1 MQMKNMTIGTRLGLGFATILALMAMITGIGVWRLQEVSKLNDAMVNDALVKERLVNTFYK 60 M++ NM IG RLGLGF IL L+A + G+ RL+ ++ + +V+ +L K++ + Sbjct: 1 MRIANMKIGVRLGLGFGLILLLVAAMGATGIMRLENINNASRNLVDQSLKKQKAAEDWLL 60 Query: 61 SIEVNIGRIVAAAKNPDVEQQKFYKQQIMSVISKNNELVKRMDELFTDEAGRAALNAINE 120 + VN R VA K+ D E Q+F+++ I + + ++ ++ + + + Sbjct: 61 ATSVNGVRTVALVKSADPETQQFFQKAITAQSKQITDIQNGVEASLVTPEEKQLFAEVGK 120 Query: 121 RRKSVLEANTEVFKEKDAGNEQAARKVVDEKLLPSTQLYIAAIEKLASMQAERIQILTAQ 180 +R ++ +F K+ GNE A++++D K++P+ Y+ ++ ++ + +++ Sbjct: 121 KRAVYVDLRKAIFAVKEKGNEAEAKQLIDSKMIPALDAYVESVREVLAHYQNEVKLADQS 180 Query: 181 IDDLFQTARKVMIGLGLVALLLGVILAWSITRSITAPLHKAVEVASRVAKGQLD-NCIEV 239 I + + R +I ++ALLLG ++AW +T IT PL +A+ VA VA+G L Sbjct: 181 ITADYASGRMTLIIGAVIALLLGALIAWRLTVGITRPLQEALSVAESVAEGDLTARSTMP 240 Query: 240 RGGDETGQLMLALKDMNEKLVGIVSRVRQGTDTIATASTEIASGNLDLSDRTEQQASSLE 299 DE G L+ AL+ M + L V+++R GTDTIATAS+EIASGNLDLS RTEQQASSLE Sbjct: 241 AANDEAGLLLKALRRMQDSLAKTVTQIRMGTDTIATASSEIASGNLDLSSRTEQQASSLE 300 Query: 300 ETASAMEELTSTVKQNADNARQANQLANSASEVAVQGGSVVSEVVATMGSINASSRKIVD 359 ETAS+MEELTSTVKQNADN+RQANQLA +AS VAV+GGSVVSEVV TMGSIN S++KIVD Sbjct: 301 ETASSMEELTSTVKQNADNSRQANQLAVAASAVAVKGGSVVSEVVNTMGSINESAKKIVD 360 Query: 360 IIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGD 419 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AAKEIK LIGD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIGD 420 Query: 420 SVGKVEAGSKLVEQAGATMDEVVASVRRVTDIVAEISSASQEQSDGIEQVNQAINLMDEA 479 SV KV+AGSKLV +AG TMDE+V V+RV DI+AEI++ASQEQSDGIEQVNQAI MD+ Sbjct: 421 SVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAIGQMDQV 480 Query: 480 TQQNAALVEQAAAAARQMQEQAASLSETVSVFRL 513 TQQNAALVE+AAAAA +Q+QA +L++ VSVF++ Sbjct: 481 TQQNAALVEEAAAAAESLQDQAKNLAQAVSVFQI 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 781,115 Number of extensions: 25712 Number of successful extensions: 248 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 21 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)