BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1720.p
         (499 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lya...   658   0.0  

>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase
           [Janthinobacterium sp. Marseille]
          Length = 495

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/492 (65%), Positives = 371/492 (75%), Gaps = 5/492 (1%)

Query: 1   MPQFDKSLVWFRRDLRTNDHAALYHALRQSRQVWCVFVFDTDILDALKAEGVQQDRRIDF 60
           MP F+K+LVWFRRDLR+ DHAAL+HALRQ RQV+C F+FD  ILD L +     DRR++F
Sbjct: 1   MPLFEKTLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPS----TDRRVEF 56

Query: 61  LLASVAELDGTLRQAGGGLIVLHGSALRQIPELAAKLQAQAVFINTDYEPLAIERDAAVA 120
           + AS+ ELD  LR  GGGLIV H  A + IP+LAA+L   AVF N DYEP AI RD AVA
Sbjct: 57  IHASLQELDTALRALGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVA 116

Query: 121 RSLQRQGAQMLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMAKLTAADGAFYLKPYPV 180
            +L   G ++ +YKD VIFEKDEVL+QS KPFSVFTPYKNAW+ KL        +  Y +
Sbjct: 117 AALATDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEI 176

Query: 181 ENYLKALAAPPGEVDHALPSHAQLGFAPSNLHELKISTGMSGAQALLSDFLGRIGAYGTA 240
           +      A  P  +   +P+ ++LGF  +NL EL I TGM G QAL  DF+ R+  Y + 
Sbjct: 177 DTLRAHFAPLPANLS-GIPALSELGFEKTNLTELNIPTGMQGGQALFDDFIDRMPDYDST 235

Query: 241 RDFPAVKGPSYLSVHLRFGTVSIRALAGAALYLMQNNQGAAGAAVWLSELIWRDFYFMIL 300
           RDFPAVKGPSYLSVHLRFGTVSIRAL   AL  M+   G  GAAVWLSEL+WRDFYFMIL
Sbjct: 236 RDFPAVKGPSYLSVHLRFGTVSIRALVRRALDAMRIGAGGTGAAVWLSELVWRDFYFMIL 295

Query: 301 HHHPRVTEQAFKPEYGAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMHNRL 360
           + HP V E+AFKP+Y AI WE GP AE LF AWC+GRTGYPLVDAAMAQ+NQ+GYMHNRL
Sbjct: 296 YQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRL 355

Query: 361 RMVVASFLTKDLGIDWRWGEQYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVT 420
           RMV ASFL KDLGIDWRWGE+YFA  LNDFDLAANNGGWQWASSSGCDAQPYFRIFNP+T
Sbjct: 356 RMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLT 415

Query: 421 QSEKFDPQGKFIRRYLPQLAKLSDKRIHAPWSATPEERLAAGVVLGQNYPRPIVDHALAR 480
           QSEKFDP GKFIRRYLPQL KLS K+IHAPW     E   AG+ LG++YP P++ H  AR
Sbjct: 416 QSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEAR 475

Query: 481 ERTLQRYAVVKK 492
            RTL RYAVVKK
Sbjct: 476 ARTLLRYAVVKK 487


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,228,841
Number of extensions: 52016
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 412
Effective length of database: 899,382
Effective search space: 370545384
Effective search space used: 370545384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)