BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1719.p (532 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982526|ref|YP_001355122.1| major facilitator superfamily d... 105 9e-24 gi|152982183|ref|YP_001354785.1| major facilitator transporter [... 104 1e-23 gi|152982589|ref|YP_001352814.1| major facilitator superfamily m... 104 1e-23 gi|152980164|ref|YP_001353279.1| major facilitator transporter [... 85 1e-17 gi|152980367|ref|YP_001352036.1| major facilitator superfamily d... 85 1e-17 >gi|152982526|ref|YP_001355122.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 481 Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 115/421 (27%), Positives = 198/421 (47%), Gaps = 10/421 (2%) Query: 36 LDQTIVGTALPTIVAELK-GFELYAWVATAYLLTSVITVPIFGRLGDYFGRKPFVIASII 94 L TIV A+P + G E WV+T ++L +++ + L FG + +I Sbjct: 34 LSSTIVNVAIPDLSRYFVLGQERAQWVSTGFMLAMTLSMLLTPWLLLRFGLRRTYGGAIC 93 Query: 95 VFVGASALCGMANSMLFLVLARGLQGIGGGMLVGTCFASIADLFPDPRVRLRWQVILSAS 154 + + + G + + L+ R L+G+ G++ I F D + + I Sbjct: 94 LLLIGGVVGGFSINYPMLLSMRVLEGLASGVMQPIPAIVILRAF-DQHEQGKAMGIFGFG 152 Query: 155 FGIATAVGPSLGGFLTEGLGWRWVFYCNLPIGVISLFFVWRFVPHIRHMHHAGKMRLDWP 214 +A AVGPS+GGFL E GWR +F+ +P ++ L + RF+ + + K LDW Sbjct: 153 VVLAPAVGPSVGGFLVELFGWRSIFFVVVPPCLVVLVLIQRFLASYTPVPDSDK-PLDWK 211 Query: 215 GALLISLSLGS-LQLLVELLPKRGITGGMMALLAVSVAAFYALWKWEQR-AAQAILPFEM 272 G LLI +S+ S L +VEL RG + LL + VA ++ R +A+ ++ ++ Sbjct: 212 GLLLIGVSIVSLLNGVVEL---RGDMPQAVVLLVIGVATLIGFILYQTRTSAEPLMNMQL 268 Query: 273 LRDRALASLFLLSVLAGFAMFSLLMYAPLLFQGGFGLSPREAGLLITPLVACITVASIVN 332 R R A L++ + G +F P+ Q G +P +AGL++ P + V + Sbjct: 269 FRHRQFAMGALVAFIYGMGLFGSTYLLPIYMQMGMNYAPSQAGLVLLPAGIVLAVTIPLA 328 Query: 333 GRIITRIPNPNLMMNLGFALIAASCLGVVLSDRNTGNGFLLAVMLAGGFGLGLVLPNLTV 392 GR+ R P PN+++ +G L+AAS + T L+A + G GLG VLP L++ Sbjct: 329 GRLADRYP-PNVLVAIGLFLLAASFALMANGSPATSYLALMAWAVIGRIGLGFVLPALSL 387 Query: 393 FAQQAAAREHLGIATALLQSLRMIGGMLGTAVTGTLVS-QMYGAGVQKALESDHAAQWLK 451 A + + + + +R +GG +G ++ G ++ ++ Q AL +D Sbjct: 388 GAMRGLDIGLVAQGASAINFVRQLGGAIGVSLVGVVLEWRIALHQAQSALGTDSHRNAFN 447 Query: 452 E 452 E Sbjct: 448 E 448 >gi|152982183|ref|YP_001354785.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 469 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 114/436 (26%), Positives = 193/436 (44%), Gaps = 27/436 (6%) Query: 5 TDAAHSSGQV----------LPFRESLLATLGICFVIMLVALDQTIVGTALPTIVAELKG 54 +D + SG V LP E A + + + + +LD I TALP + +L Sbjct: 4 SDMSRQSGAVVNHEVLEQDGLPENERRWAIVSVAIGVGMASLDTAIANTALPAMAMQLNA 63 Query: 55 FELYA-WVATAYLLTSVITVPIFGRLGDYFGRKPFVIASIIVFVGASALCGMANSMLFLV 113 + W+ Y L V T+ F LG+ G + I +++F AS C A S+ LV Sbjct: 64 TPADSVWIVNIYQLAMVATLLPFAALGEILGYRRIAIFGLLLFTAASLACAYAWSLPTLV 123 Query: 114 LARGLQGIGGGMLVGTCFASIADLFPDPRVRLRWQVILSASFGIATAVGPSLGGFLTEGL 173 +AR QG+G ++G A + ++P R+ R + +A AVGP+ + Sbjct: 124 IARFFQGVGASAIMGVNTALLRSIYPA-RMLGRGLGTNALVVAVAFAVGPTTASLILSVW 182 Query: 174 GWRWVFYCNLPIGVISLFFVWRFVPHIRHMHHAGKMRLDWPGALLISLSLGSLQLLVELL 233 W W+F N+P+G+ + F + +PH + H + D AL + G LL+ + Sbjct: 183 SWPWLFAINVPLGLFAYFLARKVLPHTKRATH----KFD---ALTAIYNAGGFGLLILAI 235 Query: 234 PKRG--ITGGMMALLAVSVAAFYALWKWEQRA-AQAILPFEMLRDRALASLFLLSVLAGF 290 + +AL F+ L Q+ A +LP ++ R R L +L L+ + F Sbjct: 236 GEGAHLSDAKTVALELFGALVFFILLLRRQKGHAAPMLPVDLFR-RPLFTLSALTAVCTF 294 Query: 291 AMFSLLMYA-PLLFQGGFGLSPREAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLG 349 A SL + P F+ G S E G LITP + + + + GR+ P P ++ +G Sbjct: 295 AAQSLAFVSLPFYFETVLGRSAIETGFLITPWAVMVGIMAPIAGRLSDHYP-PGMLGGVG 353 Query: 350 FALIAASCLGVVLSDRNTGNGFLLAVMLAGGFGLGLV-LPNLTVFAQQAAAREHLGIATA 408 ++++A + ++L + + M G G G PNL +A E G A+ Sbjct: 354 LSVLSAGMVSLILMSPDVSVFGICWRMALCGIGFGFFQAPNLRAI-MSSAPPERGGSASG 412 Query: 409 LLQSLRMIGGMLGTAV 424 ++ + R++G G A+ Sbjct: 413 VVATSRLLGQASGAAL 428 >gi|152982589|ref|YP_001352814.1| major facilitator superfamily multidrug resistance B translocase [Janthinobacterium sp. Marseille] Length = 517 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 106/419 (25%), Positives = 199/419 (47%), Gaps = 23/419 (5%) Query: 21 LLATLGICFVIMLVALDQTIVGTALPTIVAELK-GFELYAWVATAYLLTSVITVPIFGRL 79 ++ TL + + + LD +I ++P I +L + WV T++ + + I+VP+ G L Sbjct: 18 IVGTLALSLAVFMNVLDSSIANVSIPAISGDLGVSPQQGTWVITSFSVANAISVPLTGWL 77 Query: 80 GDYFGRKPFVIASIIVFVGASALCGMANSMLFLVLARGLQGIGGGMLVGTCFASIADLFP 139 G+ I SI++FV AS LCG A S+ L+ AR LQG G ++ A + +P Sbjct: 78 TQRIGQVRLFIGSILLFVLASCLCGFAPSIEILIAARVLQGAVAGPMIPLSQALLLSSYP 137 Query: 140 DPRVRLRWQVILSASFGIATAV----GPSLGGFLTEGLGWRWVFYCNLPIGVISLFFVWR 195 + + A +G+ T V GP LGG++++ W W+F+ N+PIG+ + + W Sbjct: 138 PAKSGMA-----LAFWGMTTLVAPIMGPLLGGWISDNYTWPWIFFINIPIGLFAAWATWS 192 Query: 196 FVPHIRHMHHAGKMRLDWPGALLISLSLGSLQLLVELLPKRGI--TGGMMALLAVSVAAF 253 + K+ +D G +L+ L +GSLQL+++ + +G ++ L +V+V AF Sbjct: 193 I--YKERESRTYKLPIDKVGLVLLVLWVGSLQLMLDKGKELDWFHSGEIIILASVAVVAF 250 Query: 254 YALWKWEQRAAQAILPFEMLRDRALA-SLFLLSVLAGFAMFSLLMYAPLLFQGGFGLSPR 312 WE ++ + + R + + +SV G F L+ PL Q G + Sbjct: 251 IYFVIWEIGEEHPVVDLSLFKGRNFSGGVIAISVAYGL-FFGSLVILPLWLQTQIGYTAT 309 Query: 313 EAGLLITPLVACITVASIVNGRIITRIPNPNLMMNLGFALIAASCLGVVLSDRNTGNGFL 372 EAG ++ P+ + S + G+++ +I + + F + + L + + T + + Sbjct: 310 EAGKVMAPVGIFAIILSPIVGKMLPKI-DARWVATTAFLIFS---LVFFMRSQFTQDVDM 365 Query: 373 LAVMLAG---GFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIGGMLGTAVTGTL 428 + +M+ G + + LT A + + A L +R++ G +GT+V T+ Sbjct: 366 MTLMIPTVIQGAAMAMFFIPLTSIILSGQAPDKIPAAAGLSNFVRIMFGGIGTSVMSTM 424 >gi|152980164|ref|YP_001353279.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 501 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 113/433 (26%), Positives = 206/433 (47%), Gaps = 39/433 (9%) Query: 19 ESLLATLGICFVIMLVALDQTIVGTALPTIVAELKGFELYAWVATAYLLTSVITVPIFGR 78 E+ L L + + L A++ IV T LP++V E+ G + YAW T +++ S+I R Sbjct: 45 ENGLRALALTGGVALHAINVHIVTTVLPSVVREIGGLDWYAWNTTLFMVASIIGATFSVR 104 Query: 79 LGDYFGRKPFVIASIIVFVGASALCGMANSMLFLVLARGLQGIGGGMLVGTCFASIADLF 138 + G + +++++ F S +C A+SM ++ R +QG+GGG+L +A I +F Sbjct: 105 VLAALGPRAAYLSALLTFALGSVICATASSMPMMLTGRSVQGLGGGLLAALSYALIRIVF 164 Query: 139 PDPRVRLRWQVILSASFGIATAVGPSLGGFLTEGLGWRWVFYCNLPIGVIS---LFFVWR 195 P + R ++S +GI+T GP++GG + WRW F+ LPI + +F R Sbjct: 165 TAP-LWPRAVALVSGMWGISTLCGPAVGGLFAQAGHWRWAFWTLLPIALAQAALVFIQLR 223 Query: 196 FVPHIRHMHHAGK-----MRLDWPGALLISLSLGSLQLLVELLPKRGITGGMMALLAVSV 250 + HA ++ A ++++++GS+ L+ L G+ G++ + V Sbjct: 224 PDNLVEIPKHASPPAVPLQQIALLAASVLAIAVGSMSPLL-LWQALGVAIGLL----LGV 278 Query: 251 AAFYALWKWEQRAAQAILPFEMLRDRALASLFLLSVLAGFAMFSL----LMYAPLLFQGG 306 AA + E+RA+ +LP R L S L +V A A+ + ++ P Q Sbjct: 279 AAIFC----ERRASVHMLP---TRGTEL-STPLGAVYASVALLLIGIMTEIFVPYFLQTL 330 Query: 307 FGLSPREAGLLITPLVACITVASIVN--------GRIITRIPNPNLMMNLGFALIAASCL 358 G +P AG L + A ++ S+ + R++ P + L ++ L Sbjct: 331 HGHAPLTAGYLTAAMAAGWSIGSLWSSGHQQAGAARLLRIGPALCTISLLALGILIPFDL 390 Query: 359 GVVLSDRNTGNGFLLAVMLAG-GFGLGLVLPNLTVFAQQAAAREHLGIATALLQSLRMIG 417 G+ + + T L AV LAG G G+G+ P+L AA + A+ + ++++ G Sbjct: 391 GIHVHLQTT----LCAVALAGVGTGVGIGWPHLVTRVMTAAPKGEESTASTAVTTVQLYG 446 Query: 418 GMLGTAVTGTLVS 430 +G ++ G +V+ Sbjct: 447 MAIGASIAGLVVN 459 >gi|152980367|ref|YP_001352036.1| major facilitator superfamily drug efflux transporter [Janthinobacterium sp. Marseille] Length = 478 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 127/266 (47%), Gaps = 10/266 (3%) Query: 27 ICFVIMLVALDQTIVGTALPTIVAELKGFEL-YAWVATAYLLTSVITVPIFGRLGDYFGR 85 + + + LD TI+ TA+P++ A L L V ++Y+L +++PI G + D FG Sbjct: 24 VAIALFMEQLDSTIINTAIPSMAASLHVTPLSLKAVVSSYILALAVSIPISGWMADRFGT 83 Query: 86 KPFVIASIIVFVGASALCGMANSMLFLVLARGLQGIGGGMLVGTCFASIADLFPDPRVRL 145 + ++ +F +S LCG++ ++ LV AR LQG M++ ++ FP + Sbjct: 84 RRVFSVAVGLFTFSSILCGLSVNVPMLVAARILQGFSAAMMMPVGRLTVIRTFPKSELLA 143 Query: 146 RWQVILSASFGIATAVGPSLGGFLTEGLGWRWVFYCNLPIGVISLFFVWRFVPHIRHMHH 205 ++ + I +GP++GG + L W+ +F+ N+PIG+ + + + R +P R Sbjct: 144 AMNFVIIPAL-IGPLLGPTVGGLIVHWLPWQAIFFVNVPIGLAAQWMIHRHMPDYR---S 199 Query: 206 AGKMRLDWPGALLISLSLGSLQLLVELLPKRGITGGMMALL-AVSVAAFYALWKWEQRAA 264 LD G +L + L ++E+ + + +L +S+A A +R Sbjct: 200 DSPRPLDVIGLVLFGSGVALLSWILEIFGEHYLDATSTTILFIISLALLGAYILHARRTL 259 Query: 265 QAILPFEMLRDRALASLFLLSVLAGF 290 +L + + R F +SV+ GF Sbjct: 260 HPLLQLTLFKTRT----FRVSVVGGF 281 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,125,615 Number of extensions: 43868 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 12 Length of query: 532 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 444 Effective length of database: 895,685 Effective search space: 397684140 Effective search space used: 397684140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)