BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1718.p
         (454 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium...   764   0.0  
gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium...    77   2e-15

>gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium
           sp. Marseille]
          Length = 454

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/453 (79%), Positives = 410/453 (90%)

Query: 1   MSETPFTHSQDQLKQLAQDVLRYARDKGASDAAVDISEGSGLSVAVRKGKIETIEQNKDK 60
           MSE+ F HSQDQLKQLAQDVLRYA++KGASDAAV+I+EGSGLSV+VRKG +ETIEQNKDK
Sbjct: 1   MSESVFIHSQDQLKQLAQDVLRYAKEKGASDAAVEINEGSGLSVSVRKGGVETIEQNKDK 60

Query: 61  GIGVTVFLGEGRQVRRGNASTSDFSQQALKETVEAAYNIARFTSIDDCAGLPEAEMLEMA 120
           G+GVTV+LG    VRRGNASTSDFSQQALK+TVEAAYNIARFT+ DDCAGLPE +MLE+ 
Sbjct: 61  GMGVTVYLGGDGHVRRGNASTSDFSQQALKDTVEAAYNIARFTAEDDCAGLPEVDMLELN 120

Query: 121 PRDLKLFSPWNISAEEAVALAQRCETAALETDARISNSEGAGVYVQHSHFIAANSRGFMG 180
           PRDL+L  PW IS+EEAV LA+R E AA   D RI+NSEGA +Y Q SHF++ANSRGF+G
Sbjct: 121 PRDLQLCYPWLISSEEAVELAKRGEAAAFAVDKRITNSEGASIYAQQSHFVSANSRGFIG 180

Query: 181 GYPFSRHTISVAPIAGKGAAMQRDDWYSSKRDPKKLARPEAIGRYAAERALARLNARKLS 240
           GYP+SRHTISVAPIAGKG+ MQRDDWYSS RDPKKLA+PEA+G+YAA+RALARLNARK+ 
Sbjct: 181 GYPYSRHTISVAPIAGKGSNMQRDDWYSSMRDPKKLAKPEAVGQYAAQRALARLNARKID 240

Query: 241 TRKCPVLFEAPLAAGLLGAFVQAVSGGALYRKSTFLLDSLGQQVFPEHIQILEDPHVIGG 300
           TRKCPVLFEAPLAAGLLGAFVQAVSGGALYRKSTFLLDSLG+  F  H+QI+EDPHVIGG
Sbjct: 241 TRKCPVLFEAPLAAGLLGAFVQAVSGGALYRKSTFLLDSLGKPAFAPHVQIVEDPHVIGG 300

Query: 301 VGSAPFDEEGVRTVKREVVKDGVVQGYFLSTYSARKLGMQTTGNSGGSHNLTLTSELTTR 360
           VGS+PFDEEGV+T +R+VVKDG+VQGYFLSTYSARKLGMQTTGN+GGSHNL++TS LT  
Sbjct: 301 VGSSPFDEEGVKTSRRDVVKDGIVQGYFLSTYSARKLGMQTTGNAGGSHNLSMTSSLTKS 360

Query: 361 ADTFKGMLKKMGTGLLVTELMGQGVNYVTGDYSRGASGYWVDNGVIQYPVEEITIAGNMK 420
            D FK MLKK+ TGLLVTELMGQGVNYVTGDYSRGASG+WV+ GVIQYPVEEITIAGNMK
Sbjct: 361 TDDFKAMLKKLDTGLLVTELMGQGVNYVTGDYSRGASGFWVEKGVIQYPVEEITIAGNMK 420

Query: 421 EMLRQIVAVGNDTLIRGSKETGSILLENMTIAG 453
           ++  Q+VA+G DTL+RG+K+TGS+L+ENM +AG
Sbjct: 421 DIFMQVVAIGADTLVRGTKQTGSVLIENMVVAG 453


>gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium
           sp. Marseille]
          Length = 486

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 171/409 (41%), Gaps = 37/409 (9%)

Query: 45  AVRKGKIETIEQNKDKGIGVTVFLGEGRQVRRGNASTSDFSQQALKETVEAAYNIARFTS 104
           ++ +G ++T   + D+G+GV    G+    +   + + + S++AL E   A   IAR   
Sbjct: 57  SLEEGIVKTGSFSIDQGVGVRAVSGD----KTAFSYSDEISERALLEAALATRTIAR--- 109

Query: 105 IDDCAGLPEAEMLEMAPRDLKLFSPWN----ISAEEAVALAQRCETAALETDARISNSEG 160
               AG  +      A     L+ P +    + A E V L ++ E  A   D R+     
Sbjct: 110 --QGAGKVKVASAIQAGGGRSLYLPHDPLTSLDATEKVKLLEKIERIARAKDPRVVQVM- 166

Query: 161 AGVYVQHSHFIAANSRGFMGG--YPFSRHTISVAPIAGKGAAMQRDDWYSSKRDPKKLAR 218
           AG+  ++   +   S G +     P  R +I+V  IA +    +        R       
Sbjct: 167 AGLAGEYDVVLVVRSDGVLAADIRPLVRVSITV--IAEQNGRREMGSSGGGGRYSYAYFD 224

Query: 219 PEAIGRYAAE---RALARLNARKLSTRKCPVLFEAPLAAGLLGAFVQAVSG----GALYR 271
            E + +YA+E    AL  L AR        V+    L  G  G  +    G    G   R
Sbjct: 225 DELLEKYASEAVASALVNLEARPAPAGPMTVV----LGPGWPGVLLHEAIGHGLEGDFNR 280

Query: 272 K-STFLLDSLGQQVFPEHIQILEDPHVIGGVGSAPFDEEGVRTVKREVVKDGVVQGYFLS 330
           K S+     +G++V  + + +++D  +    GS   D+EG  T    +++DG+++GY   
Sbjct: 281 KGSSAFSGRIGERVAAKGVTVVDDGTIADRRGSLNIDDEGNPTQCTTLIEDGILKGYIQD 340

Query: 331 TYSARKLGMQTTGNSGGSHNLTLTSELTTRADTFKG------MLKKMGTGLLVTELMGQG 384
           T +AR + M  TGN+       L     T      G      +L  +  GL      G  
Sbjct: 341 TMNARLMKMPVTGNARRESFAHLPMPRMTNTYMLGGDKDPAEILASVKNGLYAVNFGGGQ 400

Query: 385 VNYVTGDYSRGAS-GYWVDNGVIQYPVEEITIAGNMKEMLRQIVAVGND 432
           V+   G +   AS  Y +++G + YPV+  T+ GN  ++L ++  +GND
Sbjct: 401 VDITNGKFVFSASEAYMIEDGKVTYPVKGATLIGNGPDVLNRVSMIGND 449


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,039,371
Number of extensions: 44454
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 368
Effective length of database: 903,079
Effective search space: 332333072
Effective search space used: 332333072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)