BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1712.p
         (153 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982016|ref|YP_001354616.1| MarR family transcriptional reg...   200   3e-53
gi|152981973|ref|YP_001352045.1| MarR family transcriptional reg...    55   3e-09

>gi|152982016|ref|YP_001354616.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 163

 Score =  200 bits (509), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 121/147 (82%)

Query: 1   MNSKTDKRKAAPLLDAQLCFALYSTSLSMSKLYRKLLRNLGITYSQYLVLMVLWEQDQLT 60
           M SK+ K   AP LD QLCFALYSTSL+MSK+YRKLL  LG+TYSQYLV+MVLWEQD+LT
Sbjct: 13  MKSKSTKPDNAPRLDNQLCFALYSTSLAMSKVYRKLLPRLGLTYSQYLVMMVLWEQDELT 72

Query: 61  VSDIGERLVLDSATLTPLLKRMEAQGLVSRERAASDERQVVISLTAEGDKLREQAIELPR 120
           VSDIGERL LDSATLTPLLKRMEA  L++R RAA+DERQV+I+LT  GD LR +A+E+  
Sbjct: 73  VSDIGERLFLDSATLTPLLKRMEAAELITRVRAANDERQVIITLTKSGDALRSKALEMQG 132

Query: 121 EVLRATESTAAELSAMKEELMALRARL 147
           EVL AT  +  E+ AMKE+L+ LR++L
Sbjct: 133 EVLCATACSLDEVVAMKEQLVTLRSKL 159


>gi|152981973|ref|YP_001352045.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 149

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 41  GITYSQYLVLMVLWEQDQLTVSDIGERLVLDSATLTPLLKRMEAQGLVSRERAASDERQV 100
           G+T SQ+ ++  L     ++  ++GER ++   TLT ++ R+E +GLV+R     D R  
Sbjct: 32  GLTPSQFDIIATLGNTCGMSFKELGERTLITKGTLTGVIDRLEEKGLVTRVTQIEDRRST 91

Query: 101 VISLTAEGD----KLREQAIELPREVLRATESTAAELSAMKEELMALRARL 147
           ++ LTA GD    ++  Q +   ++        A +  A+ +EL  L A L
Sbjct: 92  LVKLTAAGDAEFKRVFSQQVAFGKQSF--VNYDAQDFDALDKELTKLHANL 140


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.128    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 275,198
Number of extensions: 8963
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 153
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 77
Effective length of database: 940,049
Effective search space: 72383773
Effective search space used: 72383773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)