BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1711.p (499 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 157 1e-39 gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 140 3e-34 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 100 2e-22 gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic su... 60 4e-10 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 132/475 (27%), Positives = 209/475 (44%), Gaps = 42/475 (8%) Query: 29 TLNISLDADPGKLDPTQSSMLNERILYQSIFDKLVDLDGEGKIVPMLAERWTVSDDQKTY 88 TL ++ AD D S N + L + ++D LV D +G I P LA+ W +S D KTY Sbjct: 77 TLRATVAADTTTFDVHSISHGNVQWLGRILYDGLVYQDEQGNISPWLAKSWEISPDGKTY 136 Query: 89 TLYLRKGVKFQDGTPFDAKAVEFNLLRGQE---KTSLRRNELKYVSKITVVDDHTIKLDL 145 T +LR V F DG F+A+AV+ NL ++ K+ L ++ + +VD++T + L Sbjct: 137 TFHLRDDVTFSDGVRFNAEAVQVNLEHMRDPATKSPLAAAYIRPYLRGRIVDEYTFEATL 196 Query: 146 STPFAPFLSILTDRAGMMSSPTAVKKYGEDYVNHPVGTGPFIYEGRLKGATLTLKKNPDY 205 S P++PFL +L M SP +++ + HP+G+GPF+ E ++ K DY Sbjct: 197 SEPYSPFLDVLAQSWLSMISPKQIRENPKSIAEHPIGSGPFVLESYVRAQGANFVKRADY 256 Query: 206 -W------RAGLPKVDEVVYKIMPDVNVAFNNLRSGQVDISNRFPYKEITNVPANANYTV 258 W G +D + +P+ + +++L+S Q D + P + + A+ Sbjct: 257 NWAPPVVRHKGPAYLDRIELTFVPEAMIRYSSLQSAQSDFTLDAPAQNAQAIRADPALRF 316 Query: 259 LNKPSLG--FRGFYLNTTKPPFDKKEVREAVDILIDRNAIAKVVYNNAVAP------GHS 310 ++ G FR LN K PF+ ++R+A+ + IDR +A + P +S Sbjct: 317 HSRVRKGNPFRSLTLNVEKAPFNDVQIRKALALAIDREGVAWITGFGEYEPKSDFLAANS 376 Query: 311 PFSKAQFANGPGDVPPKVDVARAKALLKAAG----KEGGFSFK---------LTLPTTAD 357 + F N +VA A L AG + G+ K L A Sbjct: 377 RYYDPSFKNA-----LTYNVAEANRLFDQAGWTTRDDKGYRTKDGKRLSATVLITENPAF 431 Query: 358 ELQAGQMIQGMLRPAGITVTLEKTEIASQVEAGKTGAFEGLFLGWSGRPDPDQ-NIFDFV 416 IQ R G + +E +A + G ++ L G+ PD I Sbjct: 432 PNSVAVAIQADARKVGFELNIELLPLAVITDRRYVGDYQALGGGYWHTNTPDGLYILYHS 491 Query: 417 NSGGS-----MNYSHIAAKEVDDLLQQARVEGDQAKRKVLYDQAMAILVKEVPYI 466 NS S N S + E+DD+L++AR D + K LY QA L + VP I Sbjct: 492 NSIASEKLIGQNSSRLRDAELDDVLERARKSNDPVELKALYSQAQRRLTEVVPAI 546 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 134/505 (26%), Positives = 214/505 (42%), Gaps = 52/505 (10%) Query: 17 VLAACSL-PTLAVTLNISLDADPGKLDPTQSSMLNERILYQSIFDKLVDLDGEGKIVPML 75 +L A ++ P A L I+L AD LDP ++ IFD LV++D GK+VP L Sbjct: 14 LLGALAMQPLWAADLKIALSADVSSLDPHYLNIAPNVAFSSHIFDALVNVDANGKLVPGL 73 Query: 76 AERWTVSDDQKTYTLYLRKGVKFQDGTPFDAKAVEFNLLRGQEKTSLRRNELKYVSKIT- 134 A W D T+ LR VKF DG+ F A+ V F+L R + T+ Y +I Sbjct: 74 ATSWRAV-DATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYTAYTKQIIA 132 Query: 135 --VVDDHTIKLDLSTPFAPFLSILTDRAGMMSSPTAVKKYGEDYVNHP--VGTGPFIYEG 190 +VD +T++L +TP+ P L++ ++S A K ED+ + +GTGP+ + Sbjct: 133 KKIVDPYTVRLSTATPYGP-LALDVSAIFIVSKKAAEKASTEDFNSGKALIGTGPYKFVS 191 Query: 191 RLKGATLTLKKNPDYWRAGLPKVDEVVYKIMPDVNVAFNNLRSGQVDISNRFPYKEITNV 250 +G + + +N YW G D+V ++I+ + L SG VD P +++ + Sbjct: 192 FKRGDRIEVARNEQYW-GGKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPTADLSKL 250 Query: 251 PANANYTVLNKPSLGFRGFYLNTT------------------KPPFDKKEVREAVDILID 292 NA + + K + +R + K P VR+A+ I+ Sbjct: 251 KGNAKFKLEQK--ISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAISKAIN 308 Query: 293 RNAIA-------KVVYNNAVAPGHSPFSKAQFANGPGDVPPKVDVARAKALLKAAGKEGG 345 R A+ V +N VAPG ++ A D AK LL AG G Sbjct: 309 RQALVDRTMEGLAVPASNIVAPGLLGYNDALKVEA-------YDPEGAKKLLAEAGYPNG 361 Query: 346 FSFKLTLPTT--ADELQAGQMIQGMLRPAGITVTLEKTEIASQVEAGKTGAFEGLFLGWS 403 F L P ++ Q Q + L GI +E ++ + G F LGW Sbjct: 362 FVLTLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAGEFSVALLGW- 420 Query: 404 GRPDPDQNIFDFVNSG------GSMNYSHIAAKEVDDLLQQARVEGDQAKRKVLYDQAMA 457 G D + V + G+ N+ + +D L+ + DQAKR+ +A A Sbjct: 421 GTLAGDFGLRTLVGTSNPDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKREGYAKEAAA 480 Query: 458 ILVKEVPYIYLVHDNVLFGIAKSVK 482 + +K+ + L H + + K +K Sbjct: 481 VAMKDYAVVPLHHQYATWAMRKGLK 505 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 126/477 (26%), Positives = 201/477 (42%), Gaps = 62/477 (12%) Query: 56 QSIFDKLVDLDGE-----GKIVPMLAERWTVS-DDQKTYTLYLRKGVKFQDGTPFDAKAV 109 +I+D L+ + GK++P LA W V DQK + LRKGVKF DG+ F A AV Sbjct: 58 HTIYDPLIAWEANIGTRPGKLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADAV 117 Query: 110 EFNLLR---------GQEKTSLRRNELKYVSKITVVDDHTIKLDLSTPFAPFLSILTDRA 160 +NL + ++++ R + + V+D+ +++ A F L Sbjct: 118 VWNLDKVLNDKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLP--W 175 Query: 161 GMMSSPTAVKKYGEDY---VNHPVGTGPFIYEGRLKGATLTLKKNPDYW-RAGLPKVDEV 216 ++SSP +K G D+ + GTGPF + + L KN YW ++ L + D V Sbjct: 176 FLISSPAQWEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRV 235 Query: 217 VYKIMPDVNVAFNNLRSGQVDISNRFPYKEITNVPANANYTVLN-KPSLGFRGFYLNTTK 275 + +PD N L +GQVDI P + + ++ V N P + F +T+ Sbjct: 236 ILLPIPDALTRANALLNGQVDIIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHF---STQ 292 Query: 276 P--PFDKKEVREAVDILIDRNAIAKVVYNNAVAPGHSPFSKAQFANGPGDVPPKVDVARA 333 P P+ VR+A ++ +DR+ I ++ N P + G K D+A A Sbjct: 293 PGSPWTDIRVRKAANLAVDRSGIVALM-NGLAVPAYGQLDPTSPWFGKPTFKIKYDLAAA 351 Query: 334 KALLKAAG-------------KEGGFSFKLTLPTTADELQAGQMIQGMLRPAGITVTLEK 380 +AL+ AG +GG L+LP + IQ L GI V E Sbjct: 352 RALMAQAGYSPSKPLKAKIVIAQGGTGQMLSLPMN-------EYIQQSLAEIGIQVQFEV 404 Query: 381 TEIASQVEAGKTGA---------FEGLFLGWSGRPDPDQNIFDFVNS----GGSMNYSHI 427 E+ + ++GA + LG+ DP + F +S +N+ Sbjct: 405 VELETLYLHWRSGAKGDINAGKGITAINLGYV-TADPFYALTRFADSRYVAPNGVNWGGW 463 Query: 428 AAKEVDDLLQQARVEGDQAKRKVLYDQAMAILVKEVPYIYLVHDNVLFGIAKSVKGF 484 + +VD L Q R D + L Q +V + +++VHD I+ VKGF Sbjct: 464 SNPKVDAELDQIRTTFDVKAQDKLLAQVHQAMVDDALMLWVVHDVNPHVISPKVKGF 520 >gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic substrate-binding protein [Janthinobacterium sp. Marseille] Length = 606 Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 115/266 (43%), Gaps = 27/266 (10%) Query: 74 MLAERWTVSDDQKTYTLYLRKGVKFQDGTPFDAKAVEFNLLRGQEKTSLR-RNELKYVSK 132 +LAE +S D+ + T L +F +G P A V+++ K++ + ++ L V + Sbjct: 110 LLAEDMELSADRMSMTFRLNPKARFNNGDPVLASDVKYSFDTLVAKSAPQVKSLLANVKQ 169 Query: 133 ITVVDDHTIKLDLSTPFAPFLSILTDRAGMMSSPTAVKKY--GEDY----VNHPVGTGPF 186 V+++ T++ D I+ S P +K+ G D+ + P+ TGP+ Sbjct: 170 CVVLNERTVRFDFKALNREMPLIVG------SVPVFSRKWAAGTDFDKIQLIPPITTGPY 223 Query: 187 IYEGRLKGATLTLKKNPDYW------RAGLPKVDEVVYKIMPDVNVAFNNLRSGQVDISN 240 + + G +++ K NPDYW R G+ + Y+ D ++G+ D+ Sbjct: 224 LIDRFDTGRSISYKLNPDYWGRDIPTRKGMYNFGRINYRFYKDDVARLEAFKAGEFDLVV 283 Query: 241 RFPYKEITNV---PANANYTVLNKP-----SLGFRGFYLNTTKPPFDKKEVREAVDILID 292 K P N T++ + G +GF +N +P F VR+A+ + +D Sbjct: 284 ENSAKNWARSYKGPKFNNGTIIKRELAHSNGAGMQGFLMNLRRPQFQDVRVRQALGLALD 343 Query: 293 RNAIAKVVYNNAVAPGHSPFSKAQFA 318 + + ++ + +S F+ + A Sbjct: 344 YEWMNRQLFFGSYKRIYSFFNNSPMA 369 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,137,691 Number of extensions: 47444 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 4 Length of query: 499 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 412 Effective length of database: 899,382 Effective search space: 370545384 Effective search space used: 370545384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)