BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1710.p (312 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 179 1e-46 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 177 9e-46 gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 169 3e-43 gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 131 5e-32 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 188/316 (59%), Gaps = 11/316 (3%) Query: 4 LVKRLLLSLPTLLLVSMVVF-SLLAVLPGDPVAAILGMEATPEAAAALRLKLGLDDPLLV 62 +++RL S+ L ++S++VF + A+ G+P+ +L +A A GLD PL Sbjct: 5 ILRRLGQSVLVLAVMSLLVFIGVYAI--GNPIDILLSPDADQFERARTIAAFGLDKPLWQ 62 Query: 63 QYGRWLWAVLHGDLGRSFIDNTPVAEALWQRLPVTIELAIGSFLVAVIIAVPAGILSAAR 122 QY ++ + GDLGRSF T + +RLP T+ELAI + L+++++ +P G+ + R Sbjct: 63 QYFIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISAILISIVLGIPLGLWAGLR 122 Query: 123 PRGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGF--------VPLSVDWH 174 P W +++ G S+P FW+G++ I++FAV+LGWLPASG +P+S Sbjct: 123 PHSWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPASGRGETTLLLGIPVSFLSW 182 Query: 175 ANLIAMVMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNA 234 L +++P + L A+++R+ R+ E L +DY++ A +KGLR+ +++ H L+N Sbjct: 183 DGLKHLLLPSLNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLRNSRIIGVHVLKNI 242 Query: 235 MIPVVTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVI 294 +IP+VT L ++ ++TES+F PGMGK+I+D+I D + A ++ + ++ Sbjct: 243 LIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVAYLMLIVALFIL 302 Query: 295 VNLCVDLLYSVIDPRI 310 +NL VD+ YS++DPR+ Sbjct: 303 INLIVDVAYSLLDPRV 318 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 177 bits (448), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 185/313 (59%), Gaps = 12/313 (3%) Query: 1 MPKLVKRLLLSLPTLLLVSMVVFSLLAVLPGDPVAAILG---MEATPEAAAALRLKLGLD 57 + +++ RLL L L + + F + + GD AI+G T E A +R + GLD Sbjct: 4 LKRILWRLLAGLGVLWGAATLTFIAINITAGDTALAIVGGPDAMPTAEVLAQVRKEYGLD 63 Query: 58 DPLLVQYGRWLWAVLHGDLGRSFIDNTPVAEALWQRLPVTIELAIGSFLVAVIIAVPAGI 117 DPLL QYG ++ + GDLG S+ PV +A+ Q+L T++LA+ + +++++++V + Sbjct: 64 DPLLTQYGNYIARLAKGDLGESYRLRIPVLKAVTQQLGATVQLALSAGVLSIVLSVVIAL 123 Query: 118 LSAARPRGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVPLSVDWHANL 177 L+A R W +I + L S P F +G+L +++F+ W PASG S W A Sbjct: 124 LTARRAP-WIRSIVSGAELTITSAPSFVIGILLLLVFSFYFHWFPASG----SQGWRA-- 176 Query: 178 IAMVMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIP 237 +V+P + L + +L +++R +L +VL + +I TA ++G+ D V L HALR+A++P Sbjct: 177 --LVLPTIALALPVAGVLTQVLRQALEDVLEQPFILTARARGMSDAGVRLRHALRHALVP 234 Query: 238 VVTASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNL 297 +VT SG + + +LGG V+ E +F G+G++++DA +D V L A + VIVN+ Sbjct: 235 LVTLSGFVFASLLGGAVVVEMLFARQGVGRLMLDAANTKDVPIVLGITLLAAFIYVIVNI 294 Query: 298 CVDLLYSVIDPRI 310 VD+LYS+IDPR+ Sbjct: 295 VVDVLYSLIDPRV 307 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 169 bits (427), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 178/313 (56%), Gaps = 5/313 (1%) Query: 4 LVKRLLLSLPTLLLVSMVVFSLLAVLPGDPVAAILGMEATPEAAAALRLKLGLDDPLLVQ 63 ++KRLL ++P L V+++ F L+ + PGDP+ AI +A + AAL+ GLD P+ VQ Sbjct: 5 ILKRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPADVIAALKSAYGLDKPVPVQ 64 Query: 64 YGRWLWAVLHGDLGRSFIDNTPVAEALWQRLPVTIELAIGSFLVAVIIAVPAGILSAARP 123 YG WL + GDLG S V + + T+ LA + + V+ G L+ Sbjct: 65 YGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTLLLAGVAGFIGVLFGCVLGALAGYWH 124 Query: 124 RGWANAIGTLIALFGMSVPHFWLGMLFIILFAVKLGWLPASGFVP-LSVDW---HANLIA 179 GW + I T +++ G+SVPH+WLG++ I+F++ LGW PA G P S +W + ++ Sbjct: 125 GGWIDRIATFLSVIGVSVPHYWLGLVLTIIFSIWLGWFPAMGAGPGGSSEWLWDYDHIRH 184 Query: 180 MVMPMVVTGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIPVV 239 +V+P + + I+ R VR+ + ++L ++++ ++GL + + + H +N V+ Sbjct: 185 LVLPAITLAVIPMGIITRTVRALVADMLEQEFVIALRARGLSN-RAIFRHIAKNTAPTVL 243 Query: 240 TASGLMVSGMLGGLVITESIFGIPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNLCV 299 +GL + ++GG ++ E++F PG G ++ AIFQRD +Q +L + V +NL V Sbjct: 244 AVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDMPLLQGTILVLCMFFVGLNLIV 303 Query: 300 DLLYSVIDPRIAR 312 D+L ++DPR+ R Sbjct: 304 DILQPLLDPRMGR 316 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 131 bits (329), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 171/349 (48%), Gaps = 50/349 (14%) Query: 4 LVKRLLLSLPTLLLVSMVVFSLLAVLPGDPVAAIL------------------------- 38 ++KR+LL LPTLL V + F+++ +PG PV L Sbjct: 7 IIKRVLLMLPTLLGVIAITFAVIQFVPGGPVEQALVELKGQFGAGGEAGGGGGSSQYRGR 66 Query: 39 -GMEATPEAAAALRLKLGLDDPLLVQYGRWLWAVLHG----DLGRSFIDNTPVAEALWQR 93 G++A E A ++ G D P + ++ W +L G DLG+SF + V + + + Sbjct: 67 QGIDA--ERVAEIKALYGFDKPPVERF----WQMLKGFATFDLGQSFYHHKDVWDLVVSK 120 Query: 94 LPVTIELAIGSFLVAVIIAVPAGILSAARPRGWANAIGTLIALFGMSVPHFWLGMLFIIL 153 LPV+I L + +F + I++P GI A R +++ T++ L G S+P F LG+ +++ Sbjct: 121 LPVSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVM 180 Query: 154 F--AVKLGWLPASGFVPLSVDWHA---------NLIAMVMPMVVTGLRESAILMRMVRSS 202 F + W G S +W L + +P+ + A++ + +++ Sbjct: 181 FGGGSFVQWFSLRGLT--SDNWEQLSLLGKVLDYLWHIALPVTASVAGSFAMMTMLTKNT 238 Query: 203 LLEVLNEDYIRTAFSKGLRDWQVVLGHALRNAMIPVVTA-SGLMVSGMLGGLVITESIFG 261 LE + + Y+ TA +KGL + +V+ H RNA+IP+VT + G ++ E++F Sbjct: 239 FLEEIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFS 298 Query: 262 IPGMGKMIVDAIFQRDYVTVQAGVLAATVMVVIVNLCVDLLYSVIDPRI 310 + G+G + +++ +RDY V + T++ ++V L DL Y DPR+ Sbjct: 299 LDGLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRL 347 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 618,927 Number of extensions: 23383 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 4 Length of query: 312 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 229 Effective length of database: 914,170 Effective search space: 209344930 Effective search space used: 209344930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)