BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1709.p (296 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 203 1e-53 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 173 1e-44 gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 156 1e-39 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 121 6e-29 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 203 bits (516), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 173/285 (60%), Gaps = 3/285 (1%) Query: 10 SAAPALPAQPR--W-RTLRRFSRNRLALIGAVIITVLVLLALAAPVLARYDPIFDQDYGN 66 +A P LP R W + LR+ R+ +A+ A+++ ++V A+ AP LA DP Sbjct: 11 AAVPVLPTPARGYWSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYKGSMIKR 70 Query: 67 LLSGPSAEHWLGTDDLGRDIYSRMLYGSRISLQAALISVGLAFSLGVPIGILSGYYRGAV 126 LL S + LGTD+LGRD+ SR++YG R+SL + V AF +G IG+L+GY G + Sbjct: 71 LLPIGSEGYLLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLAGYVGGRL 130 Query: 127 DAIVMRVVDALQAFPSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNL 186 + I+MRV+D AFPS++LA+A++ ALG G N+++A+ + F VR+A +R L Sbjct: 131 NMIIMRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQVRKL 190 Query: 187 DYVMAARSIGAGHLRIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPS 246 DY+ AAR GA I+ ++L N L P+ + AT + ++I AGLS+LGLG KP +P Sbjct: 191 DYIEAARMSGASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGVKPPEPE 250 Query: 247 WGSMLHIAQGYLNSTPMLAMWPGLAIFLVVLGFNLLGDGIREVFD 291 WG ML+ + + P +A PGL IF+ +GFNLL DG+R D Sbjct: 251 WGLMLNTLRSAIFRNPWVAALPGLLIFITSIGFNLLADGVRSAMD 295 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 149/263 (56%), Gaps = 6/263 (2%) Query: 21 WRTLRRFSRNRLALIGAVIITVLVLLALAAPVLARYDPIFDQDYGNLLSGPSAEHWLGTD 80 WR LR ++ A+ + L++ L +L DP+ PSA HWLGTD Sbjct: 35 WRKLRPG-----LVLAALFVLFLIVATLQPSLLTSNDPL-AASAREAFRAPSAAHWLGTD 88 Query: 81 DLGRDIYSRMLYGSRISLQAALISVGLAFSLGVPIGILSGYYRGAVDAIVMRVVDALQAF 140 + GRD+++R++YG + SL L + + S+G+ +G+ +G +D +MR++D L AF Sbjct: 89 ENGRDVWTRLIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAF 148 Query: 141 PSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNLDYVMAARSIGAGHL 200 P L+LAL + G G NA++AVG+ + R+ R Q +RN YV AA ++G Sbjct: 149 PDLLLALVIITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRS 208 Query: 201 RIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPSWGSMLHIAQGYLNS 260 ++ R++LPN++ P++I AT +G I A A LS+LG GA P P WGSML + + +L++ Sbjct: 209 TVIIRHVLPNAIKPILILATIGIGGKIAAGAALSFLGFGAPPPSPEWGSMLSVGRNFLSN 268 Query: 261 TPMLAMWPGLAIFLVVLGFNLLG 283 L PG+A+ L V+ LG Sbjct: 269 AWWLVAAPGVAVTLTVVSITALG 291 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 171/288 (59%), Gaps = 18/288 (6%) Query: 24 LRRFSRN----RLALIGAVIITVLVLLALAAPVLARYDP-------IFDQ--DYGNLLSG 70 RRFSRN ++A +G +I+ ++VL A+ APV+A +P I D + G Sbjct: 14 FRRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLEPGKQNID 73 Query: 71 PSAEHWLGTDDLGRDIYSRMLYGSRISLQAALISVGLAFSLGVPIGILSGYYRGAVDAIV 130 S + LGTD+ GRD+ S +LYG RIS+ ++S +A +G+ +G+ +GY+ G +++++ Sbjct: 74 HSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGYFGGRIESLI 133 Query: 131 MRVVDALQAFPSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNLDYVM 190 MR+ D +FP +++AL L A +G G ++A+ + + R AR A+ R +Y+ Sbjct: 134 MRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAALVERKKEYIE 193 Query: 191 AARSIGAGHLRIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPSWGSM 250 AA +G LR ++ ++LPN L PL++ A + +AI EA LS+LG+G +PS G Sbjct: 194 AATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLPVTEPSLG-- 251 Query: 251 LHIAQGY---LNSTPMLAMWPGLAIFLVVLGFNLLGDGIREVFDPKLS 295 L IA G+ ++ ++++PG+A+ L V+ NL+ D +R+V +P+L Sbjct: 252 LLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRDVLNPRLQ 299 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 121 bits (303), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 15/228 (6%) Query: 71 PSAEHWLGTDDLGRDIYSRMLYGSRISLQAALISVGLAFS---LGVPIGILSGYYRGAVD 127 PSAE+WLGTDD GRD+ +R+LYG R+S+ L + L F+ LG+ G + GY+ G D Sbjct: 123 PSAENWLGTDDRGRDVVARLLYGFRVSV---LFGLALTFTGVLLGLITGAIQGYFAGKTD 179 Query: 128 AIVMRVVDALQAFPSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNLD 187 R ++ A P L L + A+ ++ + + S R + RNL+ Sbjct: 180 LFFQRFMEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLE 239 Query: 188 YVMAARSIGAGHLRIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPSW 247 YV AAR++G + +I+WR++LPNSL P+V F M AI+A L +LGLG P S Sbjct: 240 YVQAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASL 299 Query: 248 GSMLHIAQGYLNSTPMLAMWPGLAIFLVVLGFNL----LGDGIREVFD 291 G +L AQG N + A W L+ F+V+ L +GD +R D Sbjct: 300 GELL--AQGKNN---LDAWWIALSTFVVLTVMLLLLTNIGDALRNSLD 342 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 655,794 Number of extensions: 24763 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 4 Length of query: 296 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 213 Effective length of database: 914,170 Effective search space: 194718210 Effective search space used: 194718210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)