BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1708.p (319 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 265 3e-72 gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC tr... 242 3e-65 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 230 1e-61 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 209 2e-55 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 202 2e-53 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 265 bits (677), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/318 (42%), Positives = 201/318 (63%), Gaps = 4/318 (1%) Query: 1 MLTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 ++++ +L + F+ + RR +D +SF L E +GLLGESG GKSVT ++LRL P + Sbjct: 5 LVSVRDLTVAFVGN-RRAHALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQRT- 62 Query: 61 ARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTA 120 R+SGS+ ++L L RG +M+FQEP + +P++ IG+Q++E +R H A Sbjct: 63 TRISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHEA 122 Query: 121 LPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 L + + + MLERV + +A + D YPH LSGGMRQR MIA+AL C+PRLL+ DEPT Sbjct: 123 LDHRSAMQRALQMLERVQIPQARRRYDAYPHELSGGMRQRAMIALALACKPRLLLADEPT 182 Query: 181 TALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALD T+Q QIL L+R+L++E S++ +THD+G E+ ++ VMY G++VE++SV + Sbjct: 183 TALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAGI 242 Query: 241 FDRPAHPYTHALMRARPALDATPGVPLTAIPGSVPPPGTITQGCRFAARCARAQDICRQE 300 P HPYT L+ + + + G PL A+PGS P + GC FA RC+ A+ C E Sbjct: 243 VHNPRHPYTAGLLASTVSTE-NRGKPLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTSE 301 Query: 301 MPTLENLGDGHSVRCWYP 318 P + +L +G + CW P Sbjct: 302 KPQVISL-NGERLACWNP 318 >gi|152981097|ref|YP_001355209.1| oligopeptide ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 459 Score = 242 bits (617), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 136/317 (42%), Positives = 193/317 (60%), Gaps = 4/317 (1%) Query: 2 LTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQA 61 LT++NL++ F + V V+ VSFS+G +GL+GESG GKS+TA SI+ L + Sbjct: 137 LTVQNLQMHFSAREGVVKAVEDVSFSVGPGRIMGLVGESGSGKSMTAYSIMGLIDAPGKI 196 Query: 62 RLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTAL 121 + G I E++LL +RRIRG +AMIFQ+PM +LNP+ RI Q+ E + H + Sbjct: 197 -VGGKILLQEQDLLDLSPEAMRRIRGNRVAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDV 255 Query: 122 PRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTT 181 + A L RVG++ + + YPH SGGMRQRV IA+ALL +P L++CDEPTT Sbjct: 256 SKATARAMARDALARVGIASPDERLQAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTT 315 Query: 182 ALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLF 241 ALDVTIQ QIL M+ L RE T+++ ITHDL V+A + + VMYAG++VE +V+ + Sbjct: 316 ALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADDLCVMYAGKIVESGTVQQVL 375 Query: 242 DRPAHPYTHALMRARPALDATPGVPLTAIPGSVPPPGTITQGCRFAARCARAQDICRQEM 301 ++ HPYT+ L+ + P+ + G PL IPG P + GC F RC RA C Sbjct: 376 EQTRHPYTYGLIASSPSRNIA-GQPLRQIPGMTPSLLNLPSGCAFRTRCERATAECANTP 434 Query: 302 PTLENLGDGHSVRCWYP 318 P ++ H+ RC++P Sbjct: 435 PL--SIHGTHTWRCFHP 449 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 230 bits (586), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 116/257 (45%), Positives = 168/257 (65%), Gaps = 7/257 (2%) Query: 1 MLTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 +L I+NL++ F + V+ VSFS+ E L+GESG GK+VTALS+LRL Sbjct: 3 LLDIQNLQVSFDTS----KVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRL---NQD 55 Query: 61 ARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTA 120 A G I F +++LQ +A +R +RG ++AMIFQEPMT+LNPL IG Q++E+L +H Sbjct: 56 ATYGGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEG 115 Query: 121 LPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 + + + + +L++ G+ + YPH LSGG RQR MIAMAL C+P+LL+ DEPT Sbjct: 116 ISARAAALRTVELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 175 Query: 181 TALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALDVTIQ QI++L+ L+RE+ ++LMITHDL +V RV VM G+++E ++ + L Sbjct: 176 TALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQL 235 Query: 241 FDRPAHPYTHALMRARP 257 F P YT L+ ++P Sbjct: 236 FSAPREAYTKKLLASQP 252 Score = 157 bits (397), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 142/234 (60%), Gaps = 10/234 (4%) Query: 32 ETVGLLGESGCGKSVTALSILRLFPMASQARLSGSIRFGERELLQADDATLRRIRGKEIA 91 ET+G++GESG GKS L++LRL S A + G I F + + LR +R + + Sbjct: 302 ETLGIVGESGSGKSTLGLALLRL----SGAHVKGEIAFDGQAITHQSRDALRPLRAR-MQ 356 Query: 92 MIFQEPMTSLNPLHRIGEQLSEMLRIHT-ALPRQEIDAKVIAMLERVGLSRAAQLVDEYP 150 ++FQ+P SL+P + + + E L +H L I V L+ VGLS A+++ YP Sbjct: 357 IVFQDPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEVGLS--AEMMTRYP 414 Query: 151 HSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQILDLMRDLKREQQTSILMIT 210 H SGG RQR+ IA AL+ +P L++ DEPT++LDV++Q Q+L L+ DL+++ + + I+ Sbjct: 415 HEFSGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFIS 474 Query: 211 HDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHALMRARPALDATPG 264 HDL V+ M RV+VM G+VVEQ + + +P+ PYT L+ A ++ A PG Sbjct: 475 HDLAVIRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLLAA--SVYARPG 526 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 209 bits (531), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 15/309 (4%) Query: 1 MLTIENLKIEFMSHG-------RRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILR 53 +L I++LK F G + V VDGVSFS+ + +T+G++GESGCGKS TA I R Sbjct: 20 LLMIKDLKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIAR 79 Query: 54 LFPMASQARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSE 113 L SGS+ F + + + R + + M+FQ+ SLNP I E ++ Sbjct: 80 LV-----TPDSGSMIFDGEGVAEFGGIEFKEFR-RNLQMVFQDSFASLNPRLTISETVAY 133 Query: 114 MLRIHTALPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRL 173 + H + + + + A+L RVGL + Q YPH LSGG RQRV IA AL +PRL Sbjct: 134 GPQAH-GVSKAQATERAHALLARVGL-QPEQFASRYPHELSGGQRQRVNIARALAFEPRL 191 Query: 174 LVCDEPTTALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVE 233 ++ DE ALD ++QAQ+L+L+++LK E + L I+HDL VV + V+VMY GQVVE Sbjct: 192 VILDEAVAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVE 251 Query: 234 QSSVEDLFDRPAHPYTHALMRARPALDATPGVPLTAIPGSVPPPGTITQGCRFAARCARA 293 VED++ HPYT AL+ A P++D T + G P P GCRF RC A Sbjct: 252 MGPVEDIYGNSRHPYTRALLSAVPSMDPANRTQHTPLSGDPPNPINPPSGCRFRERCPHA 311 Query: 294 QDICRQEMP 302 + +C ++P Sbjct: 312 EAVCAAQVP 320 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 173/286 (60%), Gaps = 14/286 (4%) Query: 1 MLTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 ++ +ENL + F G V + G+SF+L + E + L+GESG GKSVT+ +++ L S Sbjct: 12 LVEVENLHVRFGHGGPAV--IKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSS 69 Query: 61 ARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTA 120 + + + F +L + ++ T R IRG+ I + Q+ + SL+PL +G +++E L++H Sbjct: 70 LQ-ADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAK 128 Query: 121 LPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 L +QE + KVIA+L VG+ + + +YPH LSGG+RQR +IA A+ C P LL+ DEPT Sbjct: 129 LTKQEREEKVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPT 188 Query: 181 TALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALD +QAQ+LDL+ L R ++L+++HD VV+ + RV VM+ G++VEQ ++ + Sbjct: 189 TALDAAVQAQVLDLLESL-RTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAI 247 Query: 241 FDRPAHPYTHALMRA----------RPALDATPGVPLTAIPGSVPP 276 P HPYT +L+ A R + T L +P +PP Sbjct: 248 LHDPQHPYTKSLLSAVSSVQKRGPVRQKIAVTEDGHLATLPSELPP 293 Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 148/260 (56%), Gaps = 9/260 (3%) Query: 1 MLTIENL-KIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMAS 59 ++ + NL K+ F G R V VSF+L + ETVG++GESG GK+ +L L Sbjct: 302 VVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGL----- 356 Query: 60 QARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHT 119 + G++R ++ DA R R K I ++FQ+P+ S +P + + L E L + Sbjct: 357 ETPNVGNVRLRDQVWSDLSDAQQRAER-KRIQVVFQDPLASFDPRYTVERVLFEALGVAG 415 Query: 120 ALPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEP 179 ++ A+ I +L V L ++ + P LSGG RQR+ IA AL +P +L+CDEP Sbjct: 416 YTDTEKTRARAIELLHLVRLDQS--YLQRRPIELSGGQRQRIAIARALAPEPEVLICDEP 473 Query: 180 TTALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVED 239 +ALDV++QAQILDL+ DLK S L I+HDLGV+ + R++VM G VVE V + Sbjct: 474 VSALDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVRE 533 Query: 240 LFDRPAHPYTHALMRARPAL 259 +F+ P H YT L+ A P L Sbjct: 534 VFENPQHIYTQTLLSAIPQL 553 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 700,217 Number of extensions: 27151 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 58 Length of query: 319 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 236 Effective length of database: 914,170 Effective search space: 215744120 Effective search space used: 215744120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)