BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1707.p (326 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 310 1e-85 gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPa... 309 2e-85 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 229 2e-61 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 207 7e-55 gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport... 206 2e-54 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 310 bits (793), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 159/323 (49%), Positives = 212/323 (65%), Gaps = 11/323 (3%) Query: 6 PLLDVHGLKKHFAAGGST-------VKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVL 58 PLL + LKK+F G V AVD VSFS+A+G+TLG+VGESGCGKSTT R + Sbjct: 19 PLLMIKDLKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIA 78 Query: 59 RLIEPSEGSVRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVH 118 RL+ P GS+ F G+ + + + RR++QMVFQD +ASLNPR+TI E + H Sbjct: 79 RLVTPDSGSMIFDGEGVAEFGGIEFKEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAH 138 Query: 119 KLHDRATRKRKVAEALEMVGLNPA-YAARHPHEFSGGQRQRVGIARAIITRPKLVVADEA 177 + +A + L VGL P +A+R+PHE SGGQRQRV IARA+ P+LV+ DEA Sbjct: 139 GV-SKAQATERAHALLARVGLQPEQFASRYPHELSGGQRQRVNIARALAFEPRLVILDEA 197 Query: 178 VSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEE 237 V+ALD S+QAQ+LNLL+EL+ E LTYLF+SHDL V+ ++SD + VMY+G++VE+G E+ Sbjct: 198 VAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEMGPVED 257 Query: 238 VYSNPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHFHPRCPSCMEICKT 297 +Y N RHPYT+ALLSA+P P + + L G PNP PP+GC F RCP +C Sbjct: 258 IYGNSRHPYTRALLSAVPSMDPANRTQHTPLSGDPPNPINPPSGCRFRERCPHAEAVCAA 317 Query: 298 EAP--PAIKISPTHTVACHLSRP 318 + P A + HTVACH++ P Sbjct: 318 QVPALMAAAGNAAHTVACHMNDP 340 >gi|152982636|ref|YP_001355208.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 333 Score = 309 bits (791), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/316 (49%), Positives = 209/316 (66%), Gaps = 5/316 (1%) Query: 1 MTTLPPLLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRL 60 + T + + G ++H V AVD + +I G+ +GLVGESGCGKST GR + L Sbjct: 20 LDTAARIAKIFGAQRH----EEVVHAVDHANLAIHSGEVVGLVGESGCGKSTLGRIAVGL 75 Query: 61 IEPSEGSVRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKL 120 S G+ + G ++ L + R + MQM+FQDPYASLNPRM I +++ E + H + Sbjct: 76 HTLSAGTRWWKGADMAQLTTADRRRTQLAMQMIFQDPYASLNPRMRIQDIVGEAPLAHGM 135 Query: 121 HDRATRKRKVAEALEMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 A +K VA L+ VGL+PA R PH+FSGGQR R+GIARA+ RP+L+V DEAV+A Sbjct: 136 VKAAEQKDYVAALLQKVGLDPALVRRFPHQFSGGQRARIGIARALAVRPELLVCDEAVAA 195 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYS 240 LDVSIQAQ+LNL EL+ EL LTYLF+SHDL V+RHVSD + +MYLGR+VE E+++ Sbjct: 196 LDVSIQAQVLNLFIELRNELNLTYLFISHDLGVVRHVSDRVVIMYLGRIVESSPTIELFA 255 Query: 241 NPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHFHPRCPSCMEICKTEAP 300 P HPYT ALL++ P+ R K + + ++G IP+P PP+GCHFHPRCP M C E P Sbjct: 256 QPNHPYTSALLASAPKLEVR-KIDFVAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQP 314 Query: 301 PAIKISPTHTVACHLS 316 +I+P H ACHL+ Sbjct: 315 LLKEIAPQHFSACHLN 330 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 229 bits (584), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/253 (49%), Positives = 169/253 (66%), Gaps = 1/253 (0%) Query: 5 PPLLDVHGLKK-HFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEP 63 P +++V+ L K F GS AV +VSF++ +G+T+G+VGESG GK+T R VL L P Sbjct: 300 PIVVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETP 359 Query: 64 SEGSVRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKLHDR 123 + G+VR Q + L ++Q RA R+ +Q+VFQDP AS +PR T+ VL E L V D Sbjct: 360 NVGNVRLRDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDT 419 Query: 124 ATRKRKVAEALEMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDV 183 + + E L +V L+ +Y R P E SGGQRQR+ IARA+ P++++ DE VSALDV Sbjct: 420 EKTRARAIELLHLVRLDQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPVSALDV 479 Query: 184 SIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYSNPR 243 S+QAQIL+LL +L+ LGL+ LF+SHDL VI VSD I VM G +VE G EV+ NP+ Sbjct: 480 SVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREVFENPQ 539 Query: 244 HPYTQALLSAIPR 256 H YTQ LLSAIP+ Sbjct: 540 HIYTQTLLSAIPQ 552 Score = 164 bits (415), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 102/263 (38%), Positives = 149/263 (56%), Gaps = 12/263 (4%) Query: 6 PLLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLI---- 61 PL++V L F GG V + +SF++ +G+ L LVGESG GKS T R+++ L Sbjct: 11 PLVEVENLHVRFGHGGPAV--IKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRS 68 Query: 62 EPSEGSVRFMGQELTLLPESQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKL 120 + F G +L E R +R R + V QD SL+P T+G + EPL +H Sbjct: 69 SLQADRLSFDGDDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAK 128 Query: 121 HDRATRKRKVAEALEMVGLNPAYAAR---HPHEFSGGQRQRVGIARAIITRPKLVVADEA 177 + R+ KV L VG+ P +R +PH+ SGG RQR IA AI P+L++ADE Sbjct: 129 LTKQEREEKVIALLHSVGI-PQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEP 187 Query: 178 VSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEE 237 +ALD ++QAQ+L+LL L+ L VSHD AV+ ++D + VM+ G +VE G + Sbjct: 188 TTALDAAVQAQVLDLLESLRTP-DKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDA 246 Query: 238 VYSNPRHPYTQALLSAIPREHPR 260 + +P+HPYT++LLSA+ R Sbjct: 247 ILHDPQHPYTKSLLSAVSSVQKR 269 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 207 bits (527), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 152/220 (69%), Gaps = 4/220 (1%) Query: 37 GQTLGLVGESGCGKSTTGRSVLRLIEP-SEGSVRFMGQELTLLPESQLRAMRRHMQMVFQ 95 G+TLG+VGESG GKST G ++LRL +G + F GQ +T LR +R MQ+VFQ Sbjct: 301 GETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSRDALRPLRARMQIVFQ 360 Query: 96 DPYASLNPRMTIGEVLEEPLIVHK--LHDRATRKRKVAEALEMVGLNPAYAARHPHEFSG 153 DP+ASL+PR T+ +++ E L +H+ L RK VA+ L+ VGL+ R+PHEFSG Sbjct: 361 DPFASLSPRRTVEQIVGEGLALHQPQLGPHGIRK-AVADGLQEVGLSAEMMTRYPHEFSG 419 Query: 154 GQRQRVGIARAIITRPKLVVADEAVSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAV 213 GQRQR+ IARA++ +P L++ DE S+LDVS+Q Q+L LL +LQ++ G+ Y+F+SHDLAV Sbjct: 420 GQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLLLADLQKKYGMAYIFISHDLAV 479 Query: 214 IRHVSDHIGVMYLGRMVELGTCEEVYSNPRHPYTQALLSA 253 IR ++ + VM GR+VE G + V S P PYTQ LL+A Sbjct: 480 IRAMAHRVMVMKDGRVVEQGLTQTVLSKPSEPYTQRLLAA 519 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/284 (41%), Positives = 174/284 (61%), Gaps = 16/284 (5%) Query: 7 LLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEPSE- 65 LLD+ L+ F T K V+DVSFSIA G+ LVGESG GK+ T S+LRL + + Sbjct: 3 LLDIQNLQVSF----DTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATY 58 Query: 66 -GSVRFMGQELTLLPESQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPLIVHK-LHD 122 G + F GQ++ E+ +R++R + M+FQ+P +LNP TIG + E L++H+ + Sbjct: 59 GGKILFEGQDILQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHEGISA 118 Query: 123 RATRKRKVAEALEMVGL-NPAY-AARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 RA R V E L+ G+ P A +PHE SGGQRQR IA A+ +PKL++ADE +A Sbjct: 119 RAAALRTV-ELLDKTGIPEPQRRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTA 177 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYS 240 LDV+IQ QI+ LL +LQ+E + L ++HDL ++RH +D +GVM GR++E+ T ++++S Sbjct: 178 LDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVATTQQLFS 237 Query: 241 NPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHF 284 PR YT+ LL++ P + +V + + P A C F Sbjct: 238 APREAYTKKLLASQPHQLV-----NVVSEAATPLLKAEQVSCTF 276 >gi|152982798|ref|YP_001353095.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 332 Score = 206 bits (524), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 177/309 (57%), Gaps = 11/309 (3%) Query: 6 PLLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRL----I 61 PL+ V L F G A+D +SF + G+ LGL+GESG GKS T R++LRL Sbjct: 4 PLVSVRDLTVAFV-GNRRAHALDKISFDLQAGEVLGLLGESGSGKSVTLRTLLRLHPQRT 62 Query: 62 EPSEGSVRFMGQELTLLPESQLRAMRRHM-QMVFQDPYASLNPRMTIGEVLEEPLIVHKL 120 GS+ G ++ L +L A R MVFQ+P + +P TIG+ + E + H+ Sbjct: 63 TRISGSMEVDGMDVLALKGCELEAYRGGTASMVFQEPGLAFDPVYTIGQQITEAIRAHEA 122 Query: 121 HDRATRKRKVAEALEMVGLNPA---YAARHPHEFSGGQRQRVGIARAIITRPKLVVADEA 177 D + ++ + LE V + A Y A +PHE SGG RQR IA A+ +P+L++ADE Sbjct: 123 LDHRSAMQRALQMLERVQIPQARRRYDA-YPHELSGGMRQRAMIALALACKPRLLLADEP 181 Query: 178 VSALDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEE 237 +ALD ++Q QIL LLRELQ+E G++ +FV+HD+ V+D I VMY GR+VE + Sbjct: 182 TTALDATVQIQILLLLRELQKETGMSVIFVTHDIGAAVEVADKIAVMYGGRIVEENSVAG 241 Query: 238 VYSNPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHFHPRCPSCMEICKT 297 + NPRHPYT LL++ R K + + GS P+ +A P GC F PRC + + C + Sbjct: 242 IVHNPRHPYTAGLLASTVSTENRGK-PLLAVPGSPPDLSALPLGCSFAPRCSNARQQCTS 300 Query: 298 EAPPAIKIS 306 E P I ++ Sbjct: 301 EKPQVISLN 309 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 760,402 Number of extensions: 30442 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 61 Length of query: 326 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 243 Effective length of database: 914,170 Effective search space: 222143310 Effective search space used: 222143310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)