BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1705.p (239 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982182|ref|YP_001354769.1| GntR family transcriptional reg... 169 2e-43 gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 70 1e-13 gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg... 67 8e-13 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 64 1e-11 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 56 2e-09 >gi|152982182|ref|YP_001354769.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 169 bits (428), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 126/218 (57%) Query: 6 SLPEYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRG 65 SL Y +L+ DIFD LPGD+ +E E++ ++SRTPVR+AL RLQ +G ++ + Sbjct: 14 SLASQAYTRLKADIFDFHFLPGDRFSENEMSERLQMSRTPVREALFRLQREGYVEVLHKS 73 Query: 66 GWEVVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPDGPK 125 GW++ P DF+ F LY++R ++E AV +LC +L L W +P R D P Sbjct: 74 GWQIRPFDFQMFEQLYDVRSVLECAAVEQLCAMPEAPPLLQQLAELWFVPEHERITDVPT 133 Query: 126 AAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCI 185 + DE FH+ LV A+GN EMA +T+RIR++RRL+F + TY EHA IL I Sbjct: 134 LSVHDERFHEQLVEASGNAEMARIHHDITERIRVIRRLEFTKEMRIEVTYTEHAHILRAI 193 Query: 186 AAGDAESAIRLMGEHIDGSHAEVNQITLHRLHSARATA 223 + A L+ HI S +EV +IT+ LH AR A Sbjct: 194 IEKRSCQAKDLLRAHIALSQSEVKKITIQMLHQARLAA 231 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 6/192 (3%) Query: 15 LRQDIFDM----RLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVV 70 LR+ I +M L PG + ET +A F VSRTP+R+AL +L + G++ R G V Sbjct: 18 LREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPRRGAIVA 77 Query: 71 PIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAR-EPDGPKAAQL 129 I ++ +++E+ +E RL + A L AT +AR + D Sbjct: 78 EIGPQQLIEMFEVMAELEAMCA-RLAARRMSPAEHAILMATHLACKQARDDADSDAYFYK 136 Query: 130 DEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCIAAGD 189 +E FHQ + + N + E L R+R RRL + + ++++EH A++D I G Sbjct: 137 NEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTASFDEHGAVVDAIIEGK 196 Query: 190 AESAIRLMGEHI 201 + A L+ +HI Sbjct: 197 GDLAAELLRQHI 208 >gi|152982693|ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 67.4 bits (163), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 11/208 (5%) Query: 11 VYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVV 70 + A++ + I +L PG ++ E ++A F VSRT +R+AL RL G++ R GW V+ Sbjct: 13 IAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGIVMVSARRGWFVI 72 Query: 71 PIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPD--GPKAAQ 128 + +E R++IE +R + + LR A D G ++ Sbjct: 73 EPTASEAREAFEARRVIELGLLRH--ARPLSKHAIGQLREHIAREQAAIAGDDVGARSYL 130 Query: 129 LDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCIAAG 188 L + FH L GN +++T LT R + L + S E+H I+ + +G Sbjct: 131 LGD-FHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSC-EDHVHIVAALESG 188 Query: 189 DAESAIRLMGEHIDGSHAEVNQITLHRL 216 D + A RLM EH+ +V + TL+ L Sbjct: 189 DIDEAERLMLEHL-----QVVESTLYEL 211 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 7/185 (3%) Query: 19 IFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFA 78 I++ RL PG ++ E E+A F VSRT +RQAL RL + L+ + +V F+ Sbjct: 14 IYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRASQVAHPSFQEAF 73 Query: 79 DLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEAREPDGPKAAQLDEIFHQTLV 138 DLY++ ++E+ V L + + + + T A + D A +L FH L+ Sbjct: 74 DLYQILHVVESGVVDILMQTITPEQIAMLREHTAKEHAAFKAEDHDLADKLGRGFHTLLI 133 Query: 139 RAAGNQEMAETFDRLTDR---IRIVRRLDFLYGDCLHSTYEEHAAILDCIAAGDAESAIR 195 N+ + RL + I + ++DF Y C EH A++D + D+ A + Sbjct: 134 SCLANEPLNNMHARLRRKEALITALYKVDFDY--C--HLRGEHIALVDSLETRDSFRAKQ 189 Query: 196 LMGEH 200 L+ H Sbjct: 190 LLASH 194 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 55.8 bits (133), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 3/183 (1%) Query: 19 IFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVVPIDFKRFA 78 + RL+PG ++ E E+A F V RT +RQAL RL D L+ G + + Sbjct: 21 VLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKLVTIEHNRGAHITELSDLEIR 80 Query: 79 DLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAEARE-PDGPKAAQLDEIFHQTL 137 + +E+ ++E A+ + + + + A LR + A + D + +L FH + Sbjct: 81 ETFEVLAMLECAALEKFIKTITAFDI-AKLRQHIAHQSGAHQHHDIDQEFRLGPDFHVLI 139 Query: 138 VRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCIAAGDAESAIRLM 197 V A N+ + + +LT + R++ + D +H ++H+ ++D I +GD A +L+ Sbjct: 140 VGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLC-QDHSQLIDLIESGDLARAQQLL 198 Query: 198 GEH 200 H Sbjct: 199 IGH 201 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 545,548 Number of extensions: 21422 Number of successful extensions: 76 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 7 Length of query: 239 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 158 Effective length of database: 921,564 Effective search space: 145607112 Effective search space used: 145607112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)