BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1704.p
         (297 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase [...    95   6e-21

>gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase
           [Janthinobacterium sp. Marseille]
          Length = 336

 Score = 94.7 bits (234), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 1   MKVAVMGAGAVGCYFAGMLARAGHEVVLVGRPLHVEAFNTKGLRLEAKTFDDTIA--VQA 58
           MK+A++GAGA+G Y    LA AG +V  + R  ++EA    G +L      + +A  V+A
Sbjct: 1   MKIAIIGAGAIGGYVGVKLALAGEDVTFIVRGANLEAIRKNGAKLIMHDGSEHVAANVKA 60

Query: 59  STDPAIVAGADLVLFCVKSPDTETAGAQLRPHLAPDTLVLTLQNG--------------- 103
           + +       D+++  +K+   E     L   + P+T+++T+QNG               
Sbjct: 61  TNNYDEAGPQDIIVLAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLTG 120

Query: 104 -----TDNADRLRTVIP-QPVAAAVVYVATEMAGPGHVKH-----HGRGELVIEPSARSQ 152
                 D   ++   IP   V   VVY A+E+  PG +KH        GEL    S R+ 
Sbjct: 121 TRVESVDPTGKITAKIPADRVLGCVVYPASELIAPGVIKHIEGDRFPIGELDGSTSERAT 180

Query: 153 QAADALIAAGVPTEISDNVRGALWLKLIINCAYNALSAITQLPYGELVEGVGVLEVMNHL 212
           + ++    AG  + + DN+R  +WLKL  N  +N +SA++     ++ +     E+   +
Sbjct: 181 RVSECFTNAGFKSPVLDNIRSEIWLKLWGNLTFNPISALSHSTLQDICQYPLSRELAAAM 240

Query: 213 VNECKAVAAAEGVTLTGDVEVAIRKII---ETMPTQFSSTAQDVARGKPSEIDHLNGFIV 269
           + E + +A   G+    +  V + K I   E +    +S  QDV  G+  EID L G + 
Sbjct: 241 MTEAQTIAHKLGI----EFRVTLEKRIAGAEKVGKHKTSMLQDVEAGRDPEIDALVGSVA 296

Query: 270 RRGQAHGISTPVNLTVHALVKLI 292
             G+     TP   TV+ALVKL+
Sbjct: 297 ELGRLTETPTPHIDTVYALVKLL 319


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 635,181
Number of extensions: 24126
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 214
Effective length of database: 914,170
Effective search space: 195632380
Effective search space used: 195632380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)