BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1700.p (306 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 218 3e-58 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 196 2e-51 gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 187 5e-49 gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 142 2e-35 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 218 bits (556), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 124/315 (39%), Positives = 184/315 (58%), Gaps = 13/315 (4%) Query: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 MFS+++KRLL IP L V +L F+ V+L PGDP A +A +A +++ GLDKP Sbjct: 1 MFSYILKRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPADVIAALKSAYGLDKP 60 Query: 61 LPEQFVNFFVKAAQGDFGKSIRSKRPVSEEIAARFWPTLWLTIVAMIWAVIFGLVIGISS 120 +P Q+ + +A QGD G SI S R V E+ + TL L VA V+FG V+G + Sbjct: 61 VPVQYGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTLLLAGVAGFIGVLFGCVLGALA 120 Query: 121 AVWRNKWPDRLGMTLAVSGISFPAFSLGILLVQIFSVQLGWLPTVGD------------D 168 W W DR+ L+V G+S P + LG++L IFS+ LGW P +G D Sbjct: 121 GYWHGGWIDRIATFLSVIGVSVPHYWLGLVLTIIFSIWLGWFPAMGAGPGGSSEWLWDYD 180 Query: 169 TWRHYILPSITLGAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNAL 228 RH +LP+ITL ++ R R+ ++L+++FV RA+GL+ + +H +N Sbjct: 181 HIRHLVLPAITLAVIPMGIITRTVRALVADMLEQEFVIALRARGLSNR-AIFRHIAKNTA 239 Query: 229 IPVVTMMGLQFGFLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPIIQAEILLFSLEFIFI 288 V+ + GLQ G+L+GGSILVE VF WPG G LL A+ RD P++Q IL+ + F+ + Sbjct: 240 PTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDMPLLQGTILVLCMFFVGL 299 Query: 289 NLVVDVLYAVINPSI 303 NL+VD+L +++P + Sbjct: 300 NLIVDILQPLLDPRM 314 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/300 (35%), Positives = 181/300 (60%), Gaps = 4/300 (1%) Query: 8 RLLGLIPTLLLVAVLVFLFVHLLPGDPA-RLAAGPEA--DDKTVALVRADLGLDKPLPEQ 64 RLL + L A L F+ +++ GD A + GP+A + +A VR + GLD PL Q Sbjct: 10 RLLAGLGVLWGAATLTFIAINITAGDTALAIVGGPDAMPTAEVLAQVRKEYGLDDPLLTQ 69 Query: 65 FVNFFVKAAQGDFGKSIRSKRPVSEEIAARFWPTLWLTIVAMIWAVIFGLVIGISSAVWR 124 + N+ + A+GD G+S R + PV + + + T+ L + A + +++ +VI + +A R Sbjct: 70 YGNYIARLAKGDLGESYRLRIPVLKAVTQQLGATVQLALSAGVLSIVLSVVIALLTA-RR 128 Query: 125 NKWPDRLGMTLAVSGISFPAFSLGILLVQIFSVQLGWLPTVGDDTWRHYILPSITLGAAV 184 W + ++ S P+F +GILL+ +FS W P G WR +LP+I L V Sbjct: 129 APWIRSIVSGAELTITSAPSFVIGILLLLVFSFYFHWFPASGSQGWRALVLPTIALALPV 188 Query: 185 AAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQFGFLLG 244 A V+ + R + ++L++ F+ TARA+G+++ V ++H LR+AL+P+VT+ G F LLG Sbjct: 189 AGVLTQVLRQALEDVLEQPFILTARARGMSDAGVRLRHALRHALVPLVTLSGFVFASLLG 248 Query: 245 GSILVEVVFNWPGMGRLLVDAVEMRDYPIIQAEILLFSLEFIFINLVVDVLYAVINPSIR 304 G+++VE++F G+GRL++DA +D PI+ LL + ++ +N+VVDVLY++I+P +R Sbjct: 249 GAVVVEMLFARQGVGRLMLDAANTKDVPIVLGITLLAAFIYVIVNIVVDVLYSLIDPRVR 308 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 187 bits (476), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 113/322 (35%), Positives = 187/322 (58%), Gaps = 17/322 (5%) Query: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 M F+++RL + L ++++LVF+ V+ + G+P + P+AD A A GLDKP Sbjct: 1 MLDFILRRLGQSVLVLAVMSLLVFIGVYAI-GNPIDILLSPDADQFERARTIAAFGLDKP 59 Query: 61 LPEQFVNFFVKAAQGDFGKSIRSKRPVSEEIAARFWPTLWLTIVAMIWAVIFGLVIGISS 120 L +Q+ F A GD G+S I R T+ L I A++ +++ G+ +G+ + Sbjct: 60 LWQQYFIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISAILISIVLGIPLGLWA 119 Query: 121 AVWRNKWPDRLGMTLAVSGISFPAFSLGILLVQIFSVQLGWLPTVGD------------- 167 + + W + M +++ G S P F +G++L+ +F+VQLGWLP G Sbjct: 120 GLRPHSWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPASGRGETTLLLGIPVSF 179 Query: 168 ---DTWRHYILPSITLGAAVAAVMARFTRSSFIEILQEDFVRTARAKGLTETVVVIKHCL 224 D +H +LPS+ L A++ R TR+ E L +D+V+ ARAKGL + ++ H L Sbjct: 180 LSWDGLKHLLLPSLNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLRNSRIIGVHVL 239 Query: 225 RNALIPVVTMMGLQFGFLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPIIQAEILLFSLE 284 +N LIP+VT++ LQFG ++ +I+ E VF WPGMG+L++D++ + D P+I A ++L Sbjct: 240 KNILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVAYLMLIVAL 299 Query: 285 FIFINLVVDVLYAVINPSIRFK 306 FI INL+VDV Y++++P +R Sbjct: 300 FILINLIVDVAYSLLDPRVRLS 321 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 44/349 (12%) Query: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLA---------------------- 38 ++S++IKR+L ++PTLL V + F + +PG P A Sbjct: 3 LWSYIIKRVLLMLPTLLGVIAITFAVIQFVPGGPVEQALVELKGQFGAGGEAGGGGGSSQ 62 Query: 39 -AGPEA-DDKTVALVRADLGLDKPLPEQFVNFFVKAAQGDFGKSIRSKRPVSEEIAARFW 96 G + D + VA ++A G DKP E+F A D G+S + V + + ++ Sbjct: 63 YRGRQGIDAERVAEIKALYGFDKPPVERFWQMLKGFATFDLGQSFYHHKDVWDLVVSKLP 122 Query: 97 PTLWLTIVAMIWAVIFGLVIGISSAVWRNKWPDRLGMTLAVSGISFPAFSLGILL----- 151 ++ L + L +GI+ AV D L + + G S P F LG+ L Sbjct: 123 VSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVMFG 182 Query: 152 ----VQIFSV---------QLGWLPTVGDDTWRHYILPSITLGAAVAAVMARFTRSSFIE 198 VQ FS+ QL L V D W H LP A A+M T+++F+E Sbjct: 183 GGSFVQWFSLRGLTSDNWEQLSLLGKVLDYLW-HIALPVTASVAGSFAMMTMLTKNTFLE 241 Query: 199 ILQEDFVRTARAKGLTETVVVIKHCLRNALIPVVTMMGLQF-GFLLGGSILVEVVFNWPG 257 +++ +V TARAKGL+E V+ KH RNALIP+VT F G GS+L+E +F+ G Sbjct: 242 EIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFSLDG 301 Query: 258 MGRLLVDAVEMRDYPIIQAEILLFSLEFIFINLVVDVLYAVINPSIRFK 306 +G L ++V RDYP++ + LF+L + + L+ D+ Y +P ++F+ Sbjct: 302 LGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRLQFE 350 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.144 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 649,559 Number of extensions: 25369 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 4 Length of query: 306 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 223 Effective length of database: 914,170 Effective search space: 203859910 Effective search space used: 203859910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)