BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1699.p (523 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 147 1e-36 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 113 2e-26 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 106 4e-24 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 139/518 (26%), Positives = 237/518 (45%), Gaps = 46/518 (8%) Query: 14 KWLAVAALGTTLQFAAAHAFAAKSVTLAVYSTFTTMDPYDANDTLSLSMAKSFYQGLFGF 73 K L+V AL L A A + +A+ + +++DP+ N +++ + + L Sbjct: 7 KHLSVLAL---LGALAMQPLWAADLKIALSADVSSLDPHYLNIAPNVAFSSHIFDALVNV 63 Query: 74 DKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTDFKADAVKAVFDRVTNPDNKLKR 133 D + KL+P LA + + D + +L+ VKF DG+ F A+ V DR N Sbjct: 64 DANGKLVPGLATSWR-AVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGP 122 Query: 134 YNLFNR-IAKTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMISPAALKQYGNKDIAFHP- 191 Y + + I ++++ YTV++ P+ L + ++S A ++ +D Sbjct: 123 YTAYTKQIIAKKIVDPYTVRLSTATPYGPL--ALDVSAIFIVSKKAAEKASTEDFNSGKA 180 Query: 192 -VGTGPFKFVEWKQTDYVKVEKFDGYWKKGYPKVDEIIWKPVVDNNARSAMMQTGEAQFT 250 +GTGP+KFV +K+ D ++V + + YW G D++ ++ + ++ R A + +G+ Sbjct: 181 LIGTGPYKFVSFKRGDRIEVARNEQYW-GGKSDWDKVSFRIITNSAPRLAALLSGDVDAI 239 Query: 251 YPLPYEQADLLKSKPNLDV-----ISAPSII---------QRYMSMNTK----QKPFDNP 292 +P ADL K K N IS +I RY++ + P + Sbjct: 240 EGVP--TADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDI 297 Query: 293 KVREAINYAINKQALVKVAFNGYATPMDGVVPQG-VDYAFKTGPWPYDPKKAKALLAEAG 351 +VR+AI+ AIN+QALV G A P +V G + Y YDP+ AK LLAEAG Sbjct: 298 RVRQAISKAINRQALVDRTMEGLAVPASNIVAPGLLGYNDALKVEAYDPEGAKKLLAEAG 357 Query: 352 YPNGFETELWSAY-THSTAVKIIQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATA 410 YPNGF L + +++Q + Q L ++GI+ K++ L + + + Sbjct: 358 YPNGFVLTLHGPNDRYINDAQVVQTVAQFLNRIGIQTKVETLPLSVYFSKARAGE----- 412 Query: 411 PVRLLYIGWSSSTGEADWALRPLLASESFPPRL----YNTAYYKNDKVDADIAKALTVTD 466 + +GW + G D+ LR L+ + + P + +N Y N +D IA +L D Sbjct: 413 -FSVALLGWGTLAG--DFGLRTLVGTSN--PDIGWGTWNWGKYSNPALDKLIAASLGSVD 467 Query: 467 RKDKEALYKDAQQEVWKDAPWAFLVTEKLLYARNKNLK 504 + +E K+A KD L + +A K LK Sbjct: 468 QAKREGYAKEAAAVAMKDYAVVPLHHQYATWAMRKGLK 505 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 155/321 (48%), Gaps = 19/321 (5%) Query: 47 TTMDPYDANDTLSLSMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKF 106 TT D + + + + Y GL D+ + P LA+ + +S DG YT L+ V F Sbjct: 87 TTFDVHSISHGNVQWLGRILYDGLVYQDEQGNISPWLAKSWEISPDGKTYTFHLRDDVTF 146 Query: 107 QDGTDFKADAVKAVFDRVTNPDNKLKRYNLFNR-IAKTEVLNDYTVKIVLKEPFSAFINV 165 DG F A+AV+ + + +P K + R + ++++YT + L EP+S F++V Sbjct: 147 SDGVRFNAEAVQVNLEHMRDPATKSPLAAAYIRPYLRGRIVDEYTFEATLSEPYSPFLDV 206 Query: 166 LAHPSAVMISPAALKQYGNKDIAFHPVGTGPF---KFVEWKQTDYVKVEKFDGYW----- 217 LA MISP +++ K IA HP+G+GPF +V + ++VK + D W Sbjct: 207 LAQSWLSMISPKQIRE-NPKSIAEHPIGSGPFVLESYVRAQGANFVK--RADYNWAPPVV 263 Query: 218 -KKGYPKVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKPNLDVISAPSII 276 KG +D I V + R + +Q+ ++ FT P + A +++ P L S Sbjct: 264 RHKGPAYLDRIELTFVPEAMIRYSSLQSAQSDFTLDAPAQNAQAIRADPALRFHSRVRKG 323 Query: 277 Q--RYMSMNTKQKPFDNPKVREAINYAINKQALVKVAFNGYATPMDGVVPQGVDY---AF 331 R +++N ++ PF++ ++R+A+ AI+++ + + G P + Y +F Sbjct: 324 NPFRSLTLNVEKAPFNDVQIRKALALAIDREGVAWITGFGEYEPKSDFLAANSRYYDPSF 383 Query: 332 KTGPWPYDPKKAKALLAEAGY 352 K Y+ +A L +AG+ Sbjct: 384 KNA-LTYNVAEANRLFDQAGW 403 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 132/535 (24%), Positives = 219/535 (40%), Gaps = 63/535 (11%) Query: 12 TAKWLAVAALGTTLQFAAAHAFAAKSVTLAVYSTFTTMDPYDANDTLSLSMAKSFYQGLF 71 A+WL V + L + HA +++ T D + Y L Sbjct: 7 VARWLMVVPVALALH-SGVHAETVARYGISMADIPLTTGQPDRGAGAYQFTGHTIYDPLI 65 Query: 72 GFDKDM-----KLIPVLAEGYLVS-KDGLEYTIRLKQGVKFQDGTDFKADAVKAVFDRVT 125 ++ ++ KLIP LA + V KD ++ L++GVKF DG+DFKADAV D+V Sbjct: 66 AWEANIGTRPGKLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKADAVVWNLDKVL 125 Query: 126 NPDNKLKRYNL---------FNRIAKTEVLNDYTVKIVLKEPFSAFINVLAHPSAVMISP 176 N +K +++ I +NDY V+I KE + F L P ++ SP Sbjct: 126 N--DKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQL--PWFLISSP 181 Query: 177 AALKQYGN--KDIAFHPVGTGPFKFVEWKQTDYVKVEKFDGYWKKG-YPKVDEIIWKPVV 233 A ++ G A GTGPFK + + ++ K GYW K + D +I P+ Sbjct: 182 AQWEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDRVILLPIP 241 Query: 234 DNNARSAMMQTGEAQFTYPLPYEQADLLKSKPNLDVISAPSIIQRYMSMNTKQKPFDNPK 293 D R+ + G+ P + LKS V + + Y P+ + + Sbjct: 242 DALTRANALLNGQVDIIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHFSTQPGSPWTDIR 301 Query: 294 VREAINYAINKQALVKVAFNGYATP----MDGVVPQGVDYAFKT--------------GP 335 VR+A N A+++ +V + NG A P +D P FK G Sbjct: 302 VRKAANLAVDRSGIVAL-MNGLAVPAYGQLDPTSPWFGKPTFKIKYDLAAARALMAQAGY 360 Query: 336 WPYDPKKAKALLAEAGYPNGFETELWSAYTHSTAVKIIQFLQQQLAQVGIKAKIQALEAG 395 P P KAK ++A+ G ++ + +++QQ LA++GI+ + + +E Sbjct: 361 SPSKPLKAKIVIAQGG------------TGQMLSLPMNEYIQQSLAEIGIQVQFEVVE-- 406 Query: 396 QRVERVE-SWQDPATAPVR----LLYIGWSSSTGEADWALRPLLASESFPPRLYNTAYYK 450 +E + W+ A + + I T + +AL S P N + Sbjct: 407 --LETLYLHWRSGAKGDINAGKGITAINLGYVTADPFYALTRFADSRYVAPNGVNWGGWS 464 Query: 451 NDKVDADIAKALTVTDRKDKEALYKDAQQEVWKDAPWAFLVTEKLLYARNKNLKG 505 N KVDA++ + T D K ++ L Q + DA ++V + + + +KG Sbjct: 465 NPKVDAELDQIRTTFDVKAQDKLLAQVHQAMVDDALMLWVVHDVNPHVISPKVKG 519 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,211,521 Number of extensions: 49742 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 3 Length of query: 523 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 435 Effective length of database: 895,685 Effective search space: 389622975 Effective search space used: 389622975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)