BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1696.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980245|ref|YP_001354004.1| RpiR family transcriptional reg...    62   6e-11

>gi|152980245|ref|YP_001354004.1| RpiR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 286

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 11/254 (4%)

Query: 24  YPQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGISVATANRFAHALGFDGYASFRAAL 83
           Y  LSKS +K A  VL  P  A    I  L++ A +S  T  RF  A+GFDG+ +F+  L
Sbjct: 10  YDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDGWQAFKLKL 69

Query: 84  VSDFATTLAPVEKLREQVQRAATSAEIMAAACDSDIANIEATRRMLNPDHCEQAVEMILS 143
               A  LAP     E       +A+++   C+  I  +   R  L+ +  EQA++++  
Sbjct: 70  AQGLA--LAPGTG-DESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQALQVLGR 126

Query: 144 AQRVFITGFGASAYLSGLMAHTLEPYVRTVNSMAMAGGPSQAARQFFKLDSNDLVIAMVF 203
           A  +   G G S  ++    H    + R+         P   +     L   D+V+A+  
Sbjct: 127 ANTIEFYGQGTSGIIAADAQHK---FFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAISQ 183

Query: 204 PRYAADTVWLTQRAVEKGARILALTDHPGSPLVPLADV----TLYAQTDGRLSPTSDAAA 259
              +   +   Q A   GA I+ L    G+PL  LA V     L+  TD     ++  A 
Sbjct: 184 RGSSLSLLRSVQLARSSGAAIVVLAPS-GTPLAELATVLIPIDLHFHTDPYTPISARLAH 242

Query: 260 LILIQALCDAVAHR 273
           L++I  L   +A R
Sbjct: 243 LVVIDILAVGLALR 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 711,799
Number of extensions: 26624
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)