BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1695.p (311 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 86 2e-18 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 86 3e-18 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 73 2e-14 gi|152981643|ref|YP_001352264.1| LysR family transcriptional reg... 69 3e-13 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 69 3e-13 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 18/257 (7%) Query: 1 MNI--RFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALT 58 MNI R L FV +A +F A RLH TQ +S I +LE GV+LF R++R VALT Sbjct: 1 MNIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALT 60 Query: 59 ADGSKALVYAERMVKLMREMKDDMSDREVFA-GVIRIGVIESIVHSWFPDFLGRLHQAFP 117 G L A+R+++ + D M A G + + + + +S P FL +A+P Sbjct: 61 PAGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYP 120 Query: 118 RLQIEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCELPMRWVGSP------- 170 +++I++ TT ++ ++ +D+ L P+ P + + L LP+ + P Sbjct: 121 QVEIDLREATTDVQLDELAQGRIDVGLLIPPL--PDKAKLQLDYLPV--LSEPLILAVPK 176 Query: 171 --KLDIGSETLSLADLAAFPIISFARNSGPHAVIERLFSGSERAERTLHINCIA-SVATM 227 K G +T++L +A P+I F R P A + + + A T HI A + T+ Sbjct: 177 GLKAVRGKQTVALQAVAELPLIIFPRRIAP-AFHDAILACYRDAGLTPHIGQEAIQMQTI 235 Query: 228 IRLATDGFGITAVPPAI 244 I L + G GI VP ++ Sbjct: 236 IGLVSAGMGIALVPQSV 252 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 14/243 (5%) Query: 5 FLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTADGSKA 64 L +FV + +F A+ +H TQ+ VS +I LE+ F L +RS R VA T +G Sbjct: 6 LLRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESL 65 Query: 65 LVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRLQIEIV 124 L YA R+++LM E + ++ + V G I++GV E L +P +++EI Sbjct: 66 LGYARRILQLMDEAVEQVT-QSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEIT 124 Query: 125 SDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCELPMRWVGSPKLDIGSETLSLADL 184 S + L+ F + LDL L + IA P+ WV S L+ + L Sbjct: 125 SGLSHDLYRMFQQGKLDLALVKQR--KDSAPGIASWPEPLCWVDS--LNRPAALRDPVPL 180 Query: 185 AAFPIISFARNSGPHAVIERLFSGSERAERTLHINCIA-SVATMIRLATDGFGITAVPPA 243 AFPI RN HA+ + R I ++ S+A++ DG GI+ +P Sbjct: 181 VAFPIGGLYRNEMTHAL--------DAIGRRWRIGFVSTSLASVSAAVQDGLGISLLPRR 232 Query: 244 IIQ 246 + Q Sbjct: 233 MAQ 235 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 20/274 (7%) Query: 3 IRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTADGS 62 +R L+ F +AR +F AE LH TQ AVS+++ LE+ G+ LF++ +++ LT GS Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 63 KALVYAERMVKLMREMKDDMSD-REVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRLQI 121 + L Y+ +++ +E +D M+ + + G + + VI S +FP RL F R Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFP----RLLVEFARSHQ 120 Query: 122 EIVSDTTIHLHE----QFSKSNLDLVLQAEPVIGPQVSNIALCELPMRWVGSPKLDIGSE 177 + + ++H E Q + + D+ + P N A P V +P + S+ Sbjct: 121 GVTLNLSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQ 180 Query: 178 -TLSLADLAAFPIISFARNSGPHAVIERLFSGSERAERTLHINC---IASVATMIRLATD 233 + ++ L P + + S +E F +R IN I S T+ + Sbjct: 181 KNIPMSRLMQEPFVVREKGSDTWHSMEDGF-----GDRINDINVAMEIRSTETIKQAVIA 235 Query: 234 GFGITAVPPAIIQRELNEESLHLLRVDTEFPALV 267 G G++ + I EL SL +L V+ FP ++ Sbjct: 236 GMGVSFLSAHTISLELQAGSLAVLDVEG-FPVML 268 >gi|152981643|ref|YP_001352264.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 15/218 (6%) Query: 2 NIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTADG 61 I ++TFV + + AE+L T+Q VS R+ +LE+ G+RL RS + LT DG Sbjct: 11 RIELMQTFVRIVEAGSLSAAAEQLKTSQPTVSRRLQALERSLGLRLLQRSTHVMKLTEDG 70 Query: 62 SKALVYAERMVKLMREMKDDM-SDREVFAGVIRIGVIESIVH----SWFPDFLGRLHQAF 116 + A+ ++ + M+ D+ ++ G +R+ V + + D+LGR + Sbjct: 71 ERCFARAKELLDNWKAMEADLRGTQDEPEGTLRVLVPHAFGQEHLIAPLADYLGR----Y 126 Query: 117 PRLQIE-IVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCELPMRWVGSPKL-DI 174 PR+ +E ++ D H F +D +Q V+ P V I L ++P V SP+L Sbjct: 127 PRVSVEWMLHDR----HPDFIAEGIDCAIQVGVVVNPSVVAIKLFDVPRIIVASPQLVKA 182 Query: 175 GSETLSLADLAAFPIISFARNSGPHAVIERLFSGSERA 212 + +L++ +L P ++F V+ R G+E A Sbjct: 183 HASSLTVDELHTLPWLAFRTFYREEVVLTRQSDGAEHA 220 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 2/186 (1%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 M +R L F+ A+ ++F +E LH TQ +S +I +E + G++LFDR R V LT Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFA-GVIRIGVIESIVHSWFPDFLGRLHQAFPRL 119 G VYA+R + + D +++ E G + GV+ S P L ++ +P + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 120 QIEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCELPMRW-VGSPKLDIGSET 178 +I ++ + + E+ +L + P Q++ L +P+ VG +GS Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAG 180 Query: 179 LSLADL 184 ++L +L Sbjct: 181 ITLNEL 186 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 669,324 Number of extensions: 25670 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 14 Length of query: 311 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 228 Effective length of database: 914,170 Effective search space: 208430760 Effective search space used: 208430760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)