BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1692.p (450 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. ... 140 1e-34 gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthino... 120 2e-28 gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotra... 114 1e-26 gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. ... 72 1e-13 >gi|152981287|ref|YP_001352460.1| amidase [Janthinobacterium sp. Marseille] Length = 408 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 122/390 (31%), Positives = 187/390 (47%), Gaps = 41/390 (10%) Query: 69 LEGVPVSVKDLFDVAGETTLAGSTV-LRGKPAASVHAAVVQNLLKAGAIVIGKTNMTEFA 127 LEGV +VKD+FD+AG T AG+ V L G PAA+ HAA V+ LL GA +GKT E Sbjct: 42 LEGVRFAVKDVFDIAGTRTGAGNPVWLSGNPAANKHAAAVERLLSDGARFVGKTLTDELT 101 Query: 128 YSGLGINPHYGTPQNTWERNVEGGRIPGGSSSGAAISVTDGMACAAVGSDTGGSVRIPSA 187 YS GIN HYG P+N R+PGGSSSG+ +V G+A A+G+D GGSVR+P++ Sbjct: 102 YSLAGINAHYGVPRNP----ASPDRLPGGSSSGSVAAVAAGLADIALGTDCGGSVRLPAS 157 Query: 188 LNGLTGFKPTAARVSMQGVLPLSAYLDSIGPLAVSVQCCAIMDAVLAGEE-------YVA 240 G+ G +PT R+S G L L+ D++G A +++ LA E ++ Sbjct: 158 YCGVWGMRPTHGRLSGHGCLTLAHSFDTVGWFADTLEHLEQTFCALAHAETTSMPATFLT 217 Query: 241 VTPHPLRGLR---LLAPTNVVRDGMDDTVAVAYQTALARLSAAGAVIVEEAVPAFNQLAA 297 + + GL + + +++ D +AV + LA +AA ++ Sbjct: 218 LNDSGINGLLDPAVFDAFSKLKNEQSDFLAVDSELELASWAAAFRIL------------- 264 Query: 298 INAKGGFTAAEAYAWHRALIAENAAGYDQRVVSRILRGKDMSAADLLDVLHARPRWIAEV 357 A+EA+ H + ++A + R ++A + R I E+ Sbjct: 265 -------QASEAWMEHGLWVTQHADELGVDIRQRFNIAAGVTATQVRTAQEVRIAAIREL 317 Query: 358 EAQL-AGYDALVMPTVPIVAPRIAELQASDEAYYAANGKLLRNPTLINFLDGC-AVSLPC 415 L + + +V+PTVP AP + A+ + + LL I L G +S+P Sbjct: 318 NRILDSQHKVIVLPTVPTPAPLLTADSATVDDVRMRSQHLL----CIAGLAGLPQLSMPW 373 Query: 416 HAAGSAPVGLSLAAAGGQDKRLLSIALAVE 445 APVGLS+ G D+ +L A ++ Sbjct: 374 IQVNGAPVGLSIIGGRGCDEIVLHAAHKLQ 403 >gi|152979784|ref|YP_001354768.1| allophanate hydrolase [Janthinobacterium sp. Marseille] Length = 598 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 125/380 (32%), Positives = 176/380 (46%), Gaps = 22/380 (5%) Query: 68 PLEGVPVSVKDLFDVAGETTLAGSTVLRGKPAASVHAAVVQNLLKAGAIVIGKTNMTEFA 127 PL GVP + KD DVAG T A A HA VVQ LL AGAIVIGKTN+ +FA Sbjct: 67 PLYGVPFAAKDNIDVAGIRTTAACPEF--AYIAEQHATVVQRLLDAGAIVIGKTNLDQFA 124 Query: 128 YSGLGINPHYGTPQNTWERNVEGGRIPGGSSSGAAISVTDGMACAAVGSDTGGSVRIPSA 187 +GI YG N+++ G SSSG+A V G+ ++G+DT GS R+P+ Sbjct: 125 TGLVGIRSPYGAVPNSFDPEYVSGG----SSSGSASVVARGLVPFSLGTDTAGSGRVPAG 180 Query: 188 LNGLTGFKPTAARVSMQGVLPLSAYLDSIGPLAVSVQCCAIMDAVLAG----EEYVAVTP 243 LN + G KPT +S +GV+P LD + A +V ++ AG + Y P Sbjct: 181 LNNIVGLKPTVGSLSGRGVVPACRTLDCVSIFATTVADAELVFTQAAGFDAADAYSRARP 240 Query: 244 -HPLRGL----RLLAPTNVVRDGMDDTVAVAYQTALARLSAAGAVIVEEAVPAFNQLAAI 298 H L L R P G D A AY AL + A+GAV + F+Q+ A+ Sbjct: 241 EHVLNKLPAKPRFGIPAQPEFYG-DTIAAAAYAQALEAVRASGAVCIPLDFSLFDQVTAL 299 Query: 299 NAKGGFTAAEAYAWHRALIAENAAGYDQRVVSRILRGKDMSAADLLDVLHARPRWIAEVE 358 G + AE YA A E+ V I R ++ SA D + + + Sbjct: 300 LYDGPWV-AERYAAIEAFAKEHGDAIHPVVRDIIFRAREFSATDTFNAQYKLADLKRAAD 358 Query: 359 AQLAGYDALVMPTVPIVAPRIAELQASDEAYYAANGKLLRNPTLINFLDGCAVSLPCHAA 418 +A DAL++PT P +IA++ A N + + +N L+ CA+++P + Sbjct: 359 KIMASVDALLVPTAPTHY-KIADVAADP---VRRNSHMGKYTNFVNLLNWCALAVPANLR 414 Query: 419 GSA-PVGLSLAAAGGQDKRL 437 P GL+L D L Sbjct: 415 SDGLPFGLTLIGPAWSDHAL 434 >gi|152980171|ref|YP_001351884.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Janthinobacterium sp. Marseille] Length = 485 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 127/479 (26%), Positives = 207/479 (43%), Gaps = 53/479 (11%) Query: 3 STLSQLSAELAAGHITSLQLTEQALARIADPAGEGARVFTSVYAEQARAAARASDTLRAA 62 TL +LSA L + I++ +L + L RIA F V A +D A+ Sbjct: 4 KTLKELSALLHSKQISATELAQLFLDRIAQ---SDLNAFLHVDPALTLKEAALADQRLAS 60 Query: 63 GLCRSPLEGVPVSVKDLFDVAGETTLAGSTVLRGKPAASVHAAVVQNLLKAGAIVIGKTN 122 G + L G+P++ KD+F + AGS +L + A VV+ +AG + +GK N Sbjct: 61 GDT-TVLTGIPIAHKDIFVTRDWRSTAGSKMLENY-VSPFDATVVEQFKQAGMVHLGKLN 118 Query: 123 MTEFAYSGLGINPHYGTPQNTWERNVEGGRIPGGSSSGAAISVTDGMACAAVGSDTGGSV 182 EFA N ++G +N W++ G GGS++ A +T A+ +DTGGS+ Sbjct: 119 CDEFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTP----ASTATDTGGSI 174 Query: 183 RIPSALNGLTGFKPTAARVSMQGVLPLSAYLDSIGPLAVSVQCCAIMDAVLAG------- 235 R P+AL G+TG KPT VS G++ ++ LD GP+A + + C ++ + G Sbjct: 175 RQPAALCGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDST 234 Query: 236 ------EEYVAVTPHPLRGLRLLAPTNVVRDGMDDTVAVAYQTALARLSAAGAVIV---- 285 E++ PL+GL++ P G+ V A + AL GA +V Sbjct: 235 SIERDKEDFTRDLNQPLQGLKIGLPREYFGAGLAADVEQAVRAALKEYEKLGATLVDISL 294 Query: 286 ---EEAVPAFNQLAAINA----------KGGFTAAEAYAWHRALIAENAAGYDQRVVSRI 332 E ++P + +A A + G+ A + A G+ + V RI Sbjct: 295 PKTELSIPTYYVIAPAEASSNLSRFDGVRYGYRAKDYTDLSDMYRKTRAEGFGEEVKRRI 354 Query: 333 LRGKDMSAADLLDVLHARPRWIAEVEAQ-----LAGYDALVMPTVPIVAPRIAELQASDE 387 L G + + D + + + I + AQ D ++ P P VA + + Sbjct: 355 LVGAYVLSHGYYDAYYLQAQKIRRLIAQDFQQAFTQCDVIMGPVCPTVAWDLGDKADDPI 414 Query: 388 AYYAANGKLLRNPTLINFLDGCAVSLPC-----HAAGSAPVGLSLAAAGGQDKRLLSIA 441 A Y A+ + T + L G +S+PC PVGL + + +LL++A Sbjct: 415 ANYLAD--IFTLSTSLAGLPG--MSIPCGFGQGEKNSKRPVGLQIIGNYFAEAKLLNVA 469 >gi|152981221|ref|YP_001352351.1| amidase [Janthinobacterium sp. Marseille] Length = 431 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 112/237 (47%), Gaps = 25/237 (10%) Query: 3 STLSQLSAELAAGHITSLQLTEQALARIA--DPAGEGARVFTSVYAEQARAAARASDTLR 60 ++L QL+A +A +T + + I +PA + F +Q AR D Sbjct: 7 ASLKQLAACIARREVTVEDVARAGITHIEEYEPAVHAWQHFDP---QQVIEQARRLDAQP 63 Query: 61 AAGLCRSPLEGVPVSVKDLFDVAGETTLAGSTVLRG-KPAASVHAAVVQNLLKAGAIVIG 119 GL L G+P+ VKDL D A T GS + +P V AA V AGA+++G Sbjct: 64 HQGL----LYGLPIGVKDLMDTADMPTTYGSPIYENYRPL--VDAACVAASRSAGAVLMG 117 Query: 120 KTNMTEFA--YSGLGINPHYGTPQNTWERNVEGGRIPGGSSSGAAISVTDGMACAAVGSD 177 KT TEFA G NPH T PGGSSSG+A +V GM AA + Sbjct: 118 KTVTTEFATFQPGPTRNPHGATDHT-----------PGGSSSGSAAAVASGMVPAAFATQ 166 Query: 178 TGGSVRIPSALNGLTGFKPTAARVSMQGVLPLSAYLDSIGPLAVSVQCCAIMDAVLA 234 T GS+ P+A G+ G+KPT + + G+ LS LD++G L +V A LA Sbjct: 167 TAGSIVRPAAYCGVVGYKPTFGTLPLAGIKSLSPSLDTVGVLTRNVADAAFFIGALA 223 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,005,853 Number of extensions: 40689 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 4 Length of query: 450 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 364 Effective length of database: 903,079 Effective search space: 328720756 Effective search space used: 328720756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)