BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1691.p (662 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980258|ref|YP_001352397.1| DNA topoisomerase IV subunit B ... 1216 0.0 gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinob... 309 4e-85 >gi|152980258|ref|YP_001352397.1| DNA topoisomerase IV subunit B [Janthinobacterium sp. Marseille] Length = 661 Score = 1216 bits (3146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/662 (88%), Positives = 630/662 (95%), Gaps = 1/662 (0%) Query: 1 MATKKTTPSDYSESSIRVLKGLEPVKQRPGMYTRTENPLHILQEVIDNASDEALGGYGKS 60 MATKK++ +DYSESSIRVLKGLEPVKQRPGMYTRTENPLHI+QEVIDNASDEALGGY K+ Sbjct: 1 MATKKSS-ADYSESSIRVLKGLEPVKQRPGMYTRTENPLHIIQEVIDNASDEALGGYCKN 59 Query: 61 IIVTINADGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFSGGL 120 I+VT+N DGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFSGGL Sbjct: 60 IVVTLNTDGSVSVEDDGRGIPVGLHPEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFSGGL 119 Query: 121 HGVGVSVTNALATRLEITVWREGGVHTLAFSGGDVIEKLKSRPATREDKKSGTRVTVWPD 180 HGVGVSVTNAL+TRLEITVWRE GVH+LAF+GGDV+E LKSRP TR++K+SGTRVT WPD Sbjct: 120 HGVGVSVTNALSTRLEITVWRENGVHSLAFAGGDVVEPLKSRPLTRDEKRSGTRVTAWPD 179 Query: 181 AKYFDSATIPLGELQRLLRSKAVLLPGVKVTLINAKNGDTQSWQYDQGLRGYLMEQLAQS 240 AKYFDS+ IP ELQRLLRSKAVLLPGVKVTL++AK+G+TQ+WQYDQGLRGYL E LAQ+ Sbjct: 180 AKYFDSSVIPQAELQRLLRSKAVLLPGVKVTLVHAKSGETQTWQYDQGLRGYLTESLAQA 239 Query: 241 GSGETLIPLFEGEQFAGKDTDGFAEGEGASWVVAWTEEGAVVRESYVNLIPTSNGGTHES 300 + ETLIPLFEGEQ+AG D +GFAEGEGA+WVVAWTE+GAVVRESYVNLIPTSNGGTHES Sbjct: 240 SNSETLIPLFEGEQYAGADAEGFAEGEGAAWVVAWTEDGAVVRESYVNLIPTSNGGTHES 299 Query: 301 GLREGLFSAVKSFAEMHSLLPKGVKLLAEDVFARVSFVLSAKVLDPQFQGQIKERLNSRD 360 GLREGLF AVKSF EMHSLLPKGVKLL EDVFARVSFVLSAKVLDPQFQGQIKERLNSRD Sbjct: 300 GLREGLFGAVKSFVEMHSLLPKGVKLLPEDVFARVSFVLSAKVLDPQFQGQIKERLNSRD 359 Query: 361 AVRLVAGFSRPALELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEKKKSSGVAVLPGKL 420 AVRLVA F+RP+LELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEKKKSSGVAVLPGKL Sbjct: 360 AVRLVASFTRPSLELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEKKKSSGVAVLPGKL 419 Query: 421 TDCESSDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNAWETERDRLYANNEI 480 TDCES+D++RNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLN+WETERDRL+ANNEI Sbjct: 420 TDCESTDISRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWETERDRLFANNEI 479 Query: 481 HDIAVAIGVDPHGINDTPDLSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIENG 540 HDIAVAIGVDPHG NDT DLS LRYG+ICILSDADVDGSHIQVLLLTLFF+HFP+LI+ G Sbjct: 480 HDIAVAIGVDPHGKNDTVDLSNLRYGRICILSDADVDGSHIQVLLLTLFFKHFPQLIDRG 539 Query: 541 NICVARPPLYRVDAPARGKKPVQKLYALDDGELDAIEDKLRKDGLKEGAWSISRFKGLGE 600 +IC+ARPPLYRVDAPARGKKPVQK+YALDDGEL+AIEDKLRKDG+KE AW+ISRFKGLGE Sbjct: 540 HICIARPPLYRVDAPARGKKPVQKIYALDDGELEAIEDKLRKDGVKENAWTISRFKGLGE 599 Query: 601 MNAEQLWETTMNPDTRRLLPISFGEPGVQTSEERFNMLMGKGEAASRRAWIEEHGNEAEA 660 MNAEQLWETTMNPDTRRLLP+S GE + SE RFNMLMGKGEAA+RR WIEEHGNEAEA Sbjct: 600 MNAEQLWETTMNPDTRRLLPVSLGEFDLDFSEARFNMLMGKGEAAARRTWIEEHGNEAEA 659 Query: 661 DI 662 DI Sbjct: 660 DI 661 >gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 309 bits (791), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 203/568 (35%), Positives = 315/568 (55%), Gaps = 37/568 (6%) Query: 9 SDYSESSIRVLKGLEPVKQRPGMYTRTENP----LHILQEVIDNASDEALGGYGKSIIVT 64 + Y SSI++L+GLE V++RPGMY + H + EV+DN+ DE+L G+ I VT Sbjct: 15 AQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESLAGHCTEIHVT 74 Query: 65 INADGSVSVEDDGRGIPVGLH----PEEKVPTVEIVFTRLHAGGKFDKGSGGAYAFSGGL 120 I++D S+S+ D+GRGIP G+ E K EIV T LHAGGKFD+ S Y SGGL Sbjct: 75 IHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNS---YKVSGGL 131 Query: 121 HGVGVSVTNALATRLEITVWREGGVHTLAFSGG-------DVIEKLKSRP--ATREDKKS 171 HGVGVS N L+ L++T+ R+G H + F G + I+ + P + K Sbjct: 132 HGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSPIKVVGDTDKR 191 Query: 172 GTRVTVWPDAKYFDSATIPLGELQRLLRSKAVLLPGVKVTLINAKNGDTQSWQYDQGLRG 231 GT V W D + F + L + +R + L GV + L + + G + + ++ G RG Sbjct: 192 GTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKEEDFAFEGGTRG 251 Query: 232 YLMEQLAQSGSGETLIP-LFE--GEQFAGKDTDGFAEGEGASWVVAWTEEGAVVRESYVN 288 ++ E + ++ S L P +F+ GE+ + + T+ W A+ E+ + N Sbjct: 252 FV-EYINKAKS--VLHPTIFQATGERLSDQGTN-ITVDVSMQWNDAYNEQVLC----FTN 303 Query: 289 LIPTSNGGTHESGLREGLFSAVKSFAEMHSLLPKG-VKLLAEDVFARVSFVLSAKVLDPQ 347 IP +GGTH +GLR + + + + H K V++ +D+ ++ VLS KV +P+ Sbjct: 304 NIPQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVPEPK 363 Query: 348 FQGQIKERLNSRDAVRLVAGFSRPALELWLNQHVEYGKKLAELVIKQAQSRLRSAQKVEK 407 F Q K++L S + V L +L + K + +++ A++R + + + Sbjct: 364 FSSQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKARDL 423 Query: 408 KKSSGVAV---LPGKLTDCESSDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVL 464 + GV L KL DC+ D EL++VEGDSAGGSAK GRD++FQAILPLRGKVL Sbjct: 424 TRRKGVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGKVL 483 Query: 465 NAWETERDRLYANNEIHDIAVAIGVDPHGINDTPDLSGLRYGKICILSDADVDGSHIQVL 524 N + +++ A+ +I + +G D ++ LRY +I I++DADVDG+HI+ L Sbjct: 484 NVEKARFEKMLASEQITTLIATLGTSIGA--DEFNIEKLRYHRIIIMTDADVDGAHIRTL 541 Query: 525 LLTLFFRHFPKLIENGNICVARPPLYRV 552 LLTL +R P+L+E G++ +A+PPLY+V Sbjct: 542 LLTLLYRQMPQLVERGHVYIAQPPLYKV 569 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,676,500 Number of extensions: 76255 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 2 Length of query: 662 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 573 Effective length of database: 891,988 Effective search space: 511109124 Effective search space used: 511109124 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)