BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1690.p
         (250 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980531|ref|YP_001354882.1| lytic murein transglycosylase [...    57   8e-10

>gi|152980531|ref|YP_001354882.1| lytic murein transglycosylase
           [Janthinobacterium sp. Marseille]
          Length = 649

 Score = 57.4 bits (137), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 61  VTPADPPFVRTMLTHRDARKYDSLLTEAASEFGLDAALLKAVLTAESGFNATAVSSKGAV 120
           V  +D   +    T R    Y  ++  A  + GL+ A +  ++  ES F   A S  GA 
Sbjct: 456 VNTSDRTKIEVDFTQRFPSPYRDVMRTATQKLGLEMAWVYGLIRQESRFIMDARSHVGAS 515

Query: 121 GLMQILPDTAERYGLQGDRRKTLHQKLTDPKINIRLAARYLRDLMAMFPQHVELAIASYN 180
           GLMQ++P TA     +       H ++ + + NI L   YL  ++        LA A+YN
Sbjct: 516 GLMQLMPATARHVAKKIGMTDYAHSQVNEIETNILLGTSYLNMVLNDLGGSQTLATAAYN 575

Query: 181 AGEGTVQKYGNQIP------------PYPETQGYVRLV 206
           AG G  + + + +             P+ ET+ YV+ V
Sbjct: 576 AGPGRPRAWRSTLTRPVEGAIFAESIPFSETRDYVKKV 613


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 592,491
Number of extensions: 23388
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 169
Effective length of database: 921,564
Effective search space: 155744316
Effective search space used: 155744316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)