BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1689.p (771 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A ... 1291 0.0 gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinob... 410 e-115 >gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille] Length = 771 Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 619/770 (80%), Positives = 689/770 (89%) Query: 1 MTDQPTLFDQVPTAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60 MTDQ LFDQ A GE+LTL+TFAERAYLDYAISVVKGRALPDV DGQKPVQRRIL+A Sbjct: 1 MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60 Query: 61 MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120 MNEL LNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDG GNFGS Sbjct: 61 MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120 Query: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTV+FQPNYDGSTEEP+LLP+RLPF+LLNGA Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180 Query: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKITHAELMELIPGPDFPGGGQIITPKSTIA 240 SGIAVGMATEIPSHNL EVAKAAVA+IRNPK+TH ELM ++PGPDFPGGGQIIT + I+ Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240 Query: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKLKLGKKS 300 ++Y SGRGS+KVRA WKIED+ARGQWQAV+TELP G SSQ+VLEEIEELTNPK+KLGKKS Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300 Query: 301 LTPEQQTQKTTILGLLDAVRDESGREAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360 L+PEQ K T+L +LD VRDESGR+APVRLVFEPKSKNQDQTEF N LLA TSLETS S Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360 Query: 361 LNLVMIGGDGRPRQKNLSDILTEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420 +NLVMIGGDGRPRQK+L DIL EWI FRF T+TRR+QF++QKV+DRIHILEGREA+LLNI Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420 Query: 421 DKVIKIIRESDEPKPALIDAFKLSERQAEDILEIRLRQLARLEAIKIQQELAELRNEKTT 480 DKVIKIIRESDEPKPAL+DAF+LSERQA+DILEIRLRQLARLE IKIQQELAELRNEKTT Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRNEKTT 480 Query: 481 LQDLLDNPASMKKLVIKEIEGDAKTYGDARRTIIEEAERATFEQKVIDEPVTVIISQKGW 540 LQDLLDNP+SMK+LVIKEIE D K +GDARRT+IE AE+A+ E KVIDEPVTV+ISQKGW Sbjct: 481 LQDLLDNPSSMKRLVIKEIEADEKQFGDARRTLIEVAEKASVETKVIDEPVTVVISQKGW 540 Query: 541 VRARTGHGHDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALPNARGDGVP 600 VRARTGHGHDA QFTFKAGD+LY FECRTVD+LL FGSNGR+Y++ V+ALP ARGDGVP Sbjct: 541 VRARTGHGHDAAQFTFKAGDTLYNTFECRTVDSLLVFGSNGRIYSVPVSALPGARGDGVP 600 Query: 601 VTTLIELASGSSIQHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTLDEGAL 660 +TTL+ELASGS I HYFAGPAD TLLLAS A GF AK+ DM R +GGKSF TLD+G Sbjct: 601 ITTLVELASGSRILHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDE 660 Query: 661 PLAPTPVAADASAVACVSANGRLLVFGLDEMKTLSSGGRGVNLMELEKNEKLVAAQAISQ 720 PLAP PV A ASA+AC+S GRLLVFG+DE+K+L++GGRGV LM+LEKNEKL+AAQAISQ Sbjct: 661 PLAPCPVTAGASAIACLSEKGRLLVFGIDEIKSLTAGGRGVILMDLEKNEKLLAAQAISQ 720 Query: 721 KGVVVYGTGNVGKAKEIPLSGEKLLAHVGKRARKGRVLESRIKAAGLRSQ 770 +GV+V G G GKA+E+ LS L H+GKRARKG+ LES+IKA L +Q Sbjct: 721 RGVIVSGAGRGGKAQEVLLSASGLAPHIGKRARKGKALESKIKATTLTAQ 770 >gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] Length = 873 Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust. Identities = 290/819 (35%), Positives = 420/819 (51%), Gaps = 109/819 (13%) Query: 20 LTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYAMNELSLNSAAKPR-KSAAV 78 ++L ++YLDYA+SV+ GRALPDV DG KPV RR+L+AM+E++ N +P K A V Sbjct: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMN-NVWNRPFVKCARV 69 Query: 79 VGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLTP 138 VG+ +GK HPHGD S+YD LVRMAQ FSLRY L+DG GNFGS DGD AAAMRYTE RL Sbjct: 70 VGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDK 129 Query: 139 ISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGASGIAVGMATEIPSHNLTE 198 I+ LL ++D TV+F PNYDG +EP +LP R+P LL+NG+SGIAVGMAT IP HN+TE Sbjct: 130 IAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITE 189 Query: 199 VAKAAVAMIRNPKITHAELMELIPGPDFPGGGQIITPKSTIAEMYQSGRGSLKVRARWKI 258 V A+ ++RN T EL+E+IP PDFP GG II S + + Y++GRG + +RA+ Sbjct: 190 VIDGALHVLRNADATVDELIEIIPAPDFPTGG-IIYGVSGVRDGYRTGRGRVVMRAKTHF 248 Query: 259 EDLARGQWQAVIT-ELPPGVSSQRVLEEIEELTNPKLKLGKKSLTPEQQTQKTTILGLLD 317 E+ + A+I ELP V+ + +LE I EL K + G+ D Sbjct: 249 EEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDK-----------------KLDGISD 291 Query: 318 AVRDESGREAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSASLNLVMIGGDGRPRQKNL 377 +RDES + +R+V E K +N+ +N L QT L+ + +N+V + DG+P+ NL Sbjct: 292 -IRDESDKSG-MRVVIELK-RNEVPEVVLNNLYKQTQLQDTFGMNMVAL-VDGQPKLLNL 347 Query: 378 SDILTEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNIDKVIKIIRESDEPKPAL 437 +L ++S R E VTRRT F ++K +R H+LEG L NID I II+ + P A Sbjct: 348 KQMLECFLSHRREVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAK 407 Query: 438 ID--------------------------------------------AFKLSERQAEDILE 453 +D +KLS+ QA++IL+ Sbjct: 408 VDLMSRAWDSSVVREMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQ 467 Query: 454 IRLRQLARLEAIKIQQELAELRNEKTTLQDLLDNPASMKKLVIKEIEGDAKTYG----DA 509 +RL++L LE KI E E+ + L D+L P + ++ E+ YG D Sbjct: 468 MRLQRLTGLEQDKIVNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDE 527 Query: 510 RRTIIE-EAERATFEQKVIDEPVTVIISQKGWVRA----------RTGHGHDATQFTFKA 558 RR+ IE A E + + + V +S G+++A R G G A K Sbjct: 528 RRSTIELNATDLGTEDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQA--MATKD 585 Query: 559 GDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALP----NARGDGVPVTTLIELASGSSIQ 614 D + F T D +L F + GR+Y + V +P N+RG P+ + L G I Sbjct: 586 DDWIDQLFIANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGK--PIVNMFPLQDGEKIT 643 Query: 615 HYF-------AGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTLDEGALPLAPTPV 667 P D + +A+ SD K G LD+G L + Sbjct: 644 VILPISGENRTFPEDHYIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDF-LIGAAL 702 Query: 668 AADASAVACVSANGRLLVFGLDEMKTLSSGGRGVNLMELEKNEKLVA-AQAISQKGVVVY 726 V S +G+ + F ++++ + RGV M LE+ ++++A A +++ V+ Sbjct: 703 TDGKHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLT 762 Query: 727 GTGNVGKAKEIPLS-------GEKLLAHVGKRARKGRVL 758 T N G K P++ G K + + R G+V+ Sbjct: 763 ATEN-GFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 800 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,703,516 Number of extensions: 69347 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 3 Length of query: 771 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 680 Effective length of database: 884,594 Effective search space: 601523920 Effective search space used: 601523920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)