BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1682.p (917 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP... 154 3e-38 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 120 4e-28 gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport sy... 115 8e-27 gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy... 115 9e-27 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 111 2e-25 >gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 310 Score = 154 bits (388), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/207 (38%), Positives = 126/207 (60%), Gaps = 2/207 (0%) Query: 293 VDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLFGREVDPRDMTTRARV 352 +D + F +RRGE +G LG NG GK+TT+++ GL G L + RARV Sbjct: 26 IDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSGSITLVDHAIPAHAREARARV 85 Query: 353 GYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAARTEEMATRFGLLDVMDSLPESLPLG 412 G + Q +L + +V +NL++ R + +P+ I AR + L + D+ L G Sbjct: 86 GVVPQGDNLDPDFTVEENLLVFGRYFGIPDKTIQARIPSLLEFANLTNKKDAQIGELSGG 145 Query: 413 IRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEA 472 +R+RL+LA A+V+ P+L+ +DEPT+G+DP AR + W+ + L R K TIF++THFM+EA Sbjct: 146 MRRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKALLARGK-TIFLTTHFMDEA 204 Query: 473 QR-CDRISLMHAGRVLVSATPEELVRQ 498 +R CDR+++M G+++ +P EL+ Q Sbjct: 205 ERLCDRLAVMDYGKLIAEGSPRELIAQ 231 Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 28 LENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGGDMRQAEHRQQVCP 87 ++ +S + G GL+GP+G GK++ L L G A +G ++++ D H ++ Sbjct: 26 IDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSGSITLV--DHAIPAHAREARA 83 Query: 88 RIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELTAGTGLSAFLARPAGK 147 R+ +PQG NL P +VEENL F R FG + RI L L+ G+ Sbjct: 84 RVGVVPQG--DNLDPDFTVEENLLVFGRYFGIPDKTIQARIPSLLEFANLTNKKDAQIGE 141 Query: 148 LSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARIRAQRPGMSVIVATA 207 LSGGM+++L L +L++DPDL+ +DEPTTG+DP +R W+ + + A+ G ++ + T Sbjct: 142 LSGGMRRRLTLARALVNDPDLIFMDEPTTGLDPQARHMIWERLKALLAR--GKTIFLTTH 199 Query: 208 YMEEADRF-DWLVAMDAGKVLATGTPAELHARTGTASLEEAF 248 +M+EA+R D L MD GK++A G+P EL A+ + + E + Sbjct: 200 FMDEAERLCDRLAVMDYGKLIAEGSPRELIAQHIESQVLEVY 241 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 143/538 (26%), Positives = 228/538 (42%), Gaps = 83/538 (15%) Query: 18 VSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKS----SLLSLVAGARALQAGEVSVLG 73 V +G ++ +S + G + L+G G GKS +L+ L +LQA +S G Sbjct: 20 VRFGHGGPAVIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQADRLSFDG 79 Query: 74 GDMRQAEHRQQV---CPRIAYMPQGLGKNLYPTLSV----EENLQFFARLFGQGAAERRR 126 D+R+ R RI ++ Q +L P +V E L+ A+L Q ER Sbjct: 80 DDLRRFNERTWRDIRGRRIGFVMQDALGSLDPLRTVGAEVAEPLKLHAKLTKQ---EREE 136 Query: 127 RIDELTAGTGL---SAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSR 183 ++ L G+ + L + +LSGG++Q+ + ++ +P+LLI DEPTT +D + Sbjct: 137 KVIALLHSVGIPQPESRLMQYPHQLSGGLRQRALIASAIACNPELLIADEPTTALDAAVQ 196 Query: 184 AQFWDLIARIRAQRPGMSVIVATAYMEEADRF-DWLVAMDAGKVLATGT-PAELH----- 236 AQ DL+ +R P +++V + R D + M G+++ G A LH Sbjct: 197 AQVLDLLESLRT--PDKAMLVVSHDFAVVSRLADRVAVMWHGEIVEQGPLDAILHDPQHP 254 Query: 237 -----------------ARTGTASLEEAFIALLPEEKRRGHQAVQVTPLDDSNAAEVAIE 279 R A E+ +A LP E P N + +E Sbjct: 255 YTKSLLSAVSSVQKRGPVRQKIAVTEDGHLATLPSE----------LPPGVINNNPIVVE 304 Query: 280 AKGLTMRF-----GDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQG-- 332 LT F VAV V F +R+GE G +G +G GK+T +M+ GL + G Sbjct: 305 VNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNVGNV 364 Query: 333 ----QAWLFGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAAR 388 Q W + R R +V + S +V + VL L +A Sbjct: 365 RLRDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVER--VLFEAL------GVAGY 416 Query: 389 TEEMATRFGLLDVMDSL----------PESLPLGIRQRLSLAVAMVHKPELLILDEPTSG 438 T+ TR ++++ + P L G RQR+++A A+ +PE+LI DEP S Sbjct: 417 TDTEKTRARAIELLHLVRLDQSYLQRRPIELSGGQRQRIAIARALAPEPEVLICDEPVSA 476 Query: 439 VDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQRC-DRISLMHAGRVLVSATPEEL 495 +D + L+IDL R ++ +H + R DRI +M G V+ S E+ Sbjct: 477 LDVSVQAQILDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKDGIVVESGGVREV 534 Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 25/231 (10%) Query: 278 IEAKGLTMRFGDF--VAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGL------LQA 329 +E + L +RFG + + F + RGE +G +G GKS T + L GL LQA Sbjct: 13 VEVENLHVRFGHGGPAVIKGISFALHRGECLALVGESGSGKSVTSRTLVGLTGHRSSLQA 72 Query: 330 SQ----GQAWLFGREVDPRDMTTRARVGYMSQAFSLYGELS--------VRQNLVLHARL 377 + G E RD+ R R+G++ Q G L V + L LHA+L Sbjct: 73 DRLSFDGDDLRRFNERTWRDIRGR-RIGFVMQ--DALGSLDPLRTVGAEVAEPLKLHAKL 129 Query: 378 YRLP-EDQIAARTEEMATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPT 436 + E+++ A + +M P L G+RQR +A A+ PELLI DEPT Sbjct: 130 TKQEREEKVIALLHSVGIPQPESRLM-QYPHQLSGGLRQRALIASAIACNPELLIADEPT 188 Query: 437 SGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQRCDRISLMHAGRVL 487 + +D + L+ L DK + +S F ++ DR+++M G ++ Sbjct: 189 TALDAAVQAQVLDLLESLRTPDKAMLVVSHDFAVVSRLADRVAVMWHGEIV 239 >gi|152981215|ref|YP_001354983.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 303 Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 277 AIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWL 336 AI+ + + A++ V I GE FG LG NG GK+T + ++ GL +A G + Sbjct: 3 AIQINNVEKSYRALKALNGVSLSIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGNVTI 62 Query: 337 FGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAARTEEMATRF 396 G +V R +G + Q +VR+ L + + Y L + A +E+ Sbjct: 63 HGHDVVSNYRQARKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNND--AWIDEVMHHL 120 Query: 397 GLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLAR 456 L + D+ +L G+++R+ +A A+VHKP +++LDEPT+GVD R W+ + L R Sbjct: 121 DLTNKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRLNR 180 Query: 457 RDKVTIFISTHFMNEAQR-CDRISLMHAGRVLVSATPEELVRQRGAASL 504 T+ ++TH++ EAQ C+R++++ G+V+ T L+++ + L Sbjct: 181 EGH-TVVLTTHYLEEAQALCNRVAMLKGGQVVALDTTSTLIKRISGSQL 228 Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 14 RLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLG 73 ++ V Y AL VSL I G GL+GP+G GK++L+S++AG +G V++ G Sbjct: 5 QINNVEKSYRALKALNGVSLSIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGNVTIHG 64 Query: 74 GDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELTA 133 D+ + +Q + +PQ L + P +V E L+ + + G IDE+ Sbjct: 65 HDV--VSNYRQARKLLGVVPQELVFD--PFFTVRETLRMQSGYY--GLKNNDAWIDEVMH 118 Query: 134 GTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARI 193 L+ LSGGMK+++ + +L+H P +++LDEPT GVD R W I+R+ Sbjct: 119 HLDLTNKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRL 178 Query: 194 RAQRPGMSVIVATAYMEEADRFDWLVAM-DAGKVLATGTPAELHARTGTASL 244 R G +V++ T Y+EEA VAM G+V+A T + L R + L Sbjct: 179 --NREGHTVVLTTHYLEEAQALCNRVAMLKGGQVVALDTTSTLIKRISGSQL 228 >gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 348 Score = 115 bits (289), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 278 IEAKGLTMRFGD-FVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWL 336 I KGLT ++ F A+ +D IRRGEIF LG NG GK+T + ++ G++ S G Sbjct: 45 ISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVLA 104 Query: 337 FGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAARTEEMATRF 396 G ++ R ++G + Q S +V + ++ P+D A E++ Sbjct: 105 DGHDIVQDYRAARTKIGLVPQELSTDAFETVWATVNFSRGIFGKPKDH--AHIEKVLRSL 162 Query: 397 GLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLAR 456 L + DS +L G+++R+ +A A+ H+P++L LDEPT+GVD R W+++ L R Sbjct: 163 SLWEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGL-R 221 Query: 457 RDKVTIFISTHFMNEAQR-CDRISLMHAGRVLVSATPEELVRQRGAASL 504 VTI ++TH++ EA+ DRI ++ G +++ L+ + G L Sbjct: 222 ESGVTIILTTHYIEEAEEMADRIGVIRKGELILVEDKAALMAKLGKKQL 270 Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 11/220 (5%) Query: 27 ALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGGDMRQAEHRQQVC 86 AL+ + L+I G + L+GP+G GK++L+S++ G +G V G D+ Q ++R Sbjct: 60 ALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVLADGHDIVQ-DYRA-AR 117 Query: 87 PRIAYMPQGLGKNLYPTLSVEENLQFFAR-LFGQGAAERRRRIDELTAGTGLSAFLARPA 145 +I +PQ L + + T+ N F+R +FG+ + I+++ L Sbjct: 118 TKIGLVPQELSTDAFETVWATVN---FSRGIFGK--PKDHAHIEKVLRSLSLWEKKDSKI 172 Query: 146 GKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARIRAQRPGMSVIVA 205 LSGGMK+++ + +L H+P +L LDEPT GVD R W+++ +R G+++I+ Sbjct: 173 FALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLR--ESGVTIILT 230 Query: 206 TAYMEEADRF-DWLVAMDAGKVLATGTPAELHARTGTASL 244 T Y+EEA+ D + + G+++ A L A+ G L Sbjct: 231 THYIEEAEEMADRIGVIRKGELILVEDKAALMAKLGKKQL 270 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 141/293 (48%), Gaps = 13/293 (4%) Query: 276 VAIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAW 335 ++IE K + +FG+FVA+++V GE+ LG +GCGK+T ++++ GL Q GQ Sbjct: 1 MSIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 336 LFGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARL----YRLPEDQIAARTEE 391 L G + R + R +VG++ Q ++L+ ++V +N+ R+ R E QI + + Sbjct: 61 LDGEDASARHVRER-QVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTK 119 Query: 392 MATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLM 451 + L + D P L G RQR++LA A+ +P +L+LDEP +D R + + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 452 IDLARRDKVTIFISTHFMNEA-QRCDRISLMHAGRVLVSATPEELVRQRGAASLEQAFIG 510 L VT TH EA + D+I LM+ G V P++ V A+ F+G Sbjct: 180 RRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKD-VYNNPASPFVYGFLG 238 Query: 511 YLEEAAGKGDPVPSPAQNVISAPQTAKPRPGRLRTSLGRALSYSQRESLELRR 563 + G+ + ++ + A P T + + Y + LE+ R Sbjct: 239 NVNLFHGR------VHEGILQSSGIAFEAPEHAETQDTKGIGYVRPHDLEVDR 285 Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 17/230 (7%) Query: 15 LTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGG 74 + + +G AL NVSLD PAG + L+GP G GK++LL ++AG G+V + G Sbjct: 5 VKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE 64 Query: 75 D--MRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAER------RR 126 D R RQ + ++ Q L+ ++V EN+ F R+ + AA R + Sbjct: 65 DASARHVRERQ-----VGFVFQHYA--LFKHMTVFENIAFGLRV--RPAATRPSESQIKE 115 Query: 127 RIDELTAGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQF 186 ++ +L L R +LSGG +Q++ L +L +P +L+LDEP +D R + Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 187 WDLIARIRAQRPGMSVIVATAYMEEADRFDWLVAMDAGKVLATGTPAELH 236 + R+ S+ V E + D +V M+ G V G P +++ Sbjct: 176 RRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVY 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,055,776 Number of extensions: 87136 Number of successful extensions: 633 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 484 Number of HSP's successfully gapped: 123 Length of query: 917 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 825 Effective length of database: 880,897 Effective search space: 726740025 Effective search space used: 726740025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)