BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1680.p (471 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 431 e-122 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 353 9e-99 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 209 3e-55 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 201 9e-53 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 190 1e-49 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 239/450 (53%), Positives = 317/450 (70%), Gaps = 5/450 (1%) Query: 11 LLAACQSMAPTYQRPAAPVAAHY--PQQPAGMEAEAQALGWQAYFRDPQLQALITQALAN 68 +L+AC SMAP Y RP APVAA Y P + + A +GW+ +F DP+LQ LI A+AN Sbjct: 13 VLSAC-SMAPKYVRPDAPVAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQVLIGNAIAN 71 Query: 69 NRDLRVAALRVEEARALYGIQRADLLPSIGAQVGVDRSRTPADLNLTQRPLVGSAYQAGL 128 NRDLRVAALR+EEARALY IQ ADLLP++ R+R PA ++ T +V S YQ GL Sbjct: 72 NRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVVSSNYQVGL 131 Query: 129 GLSNWEIDLWGRLRSLSDAALQSALASEATRRAAALSLVAQVADAYLELAELDERLAIAR 188 GL+ +E+D +GR+RSLSDAAL + L++E +RAA +SLV++VA AYL E+ +AR Sbjct: 132 GLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSFAEQQDLAR 191 Query: 189 DTIASRQESYRIFSRRVEVGATSRLNLTQIETLLTQAQALGAQLEQLRAQRVNALSLLVG 248 T SR E+Y++ +R EVGA+S L+L E LL A+A ++ RAQ +NAL+LLVG Sbjct: 192 QTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQAMNALTLLVG 251 Query: 249 APL-ELPVGQARTALNATFPELAAGTPSLLLTRRPDVVAAELRLKAANANIGAARAAFFP 307 PL +LP QA ++ ++ AG PS LLT+RPD+ +AE L +ANANIGAARAAFFP Sbjct: 252 QPLTDLPPAQALSS-QTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANANIGAARAAFFP 310 Query: 308 SISLTGNLGTASAELSGLFRDGSQAWTFSPSITLPIFTAGRLRNNLDLAEVRRDIAVANY 367 ISLT LGT+S EL+GLF GS++W+F+P + LPIF AGR R NL+LAEVR+DIAVANY Sbjct: 311 RISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAEVRKDIAVANY 370 Query: 368 EKTVQGAFRDVADALAARQWLTRQLAIAETAEQVQSERARLSTLRYDNGAAPFLDVLDAQ 427 EK++Q AFR+V+DAL AR L +Q+ ++ Q+ER + +T R+ NG A LDVLDAQ Sbjct: 371 EKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNGIASSLDVLDAQ 430 Query: 428 RDLLSARQQRVQIRRALLSSAVALYAALGG 457 R+L +A+ VQ+R L++AV LY +LGG Sbjct: 431 RELFTAQLSLVQVRLTRLTNAVDLYRSLGG 460 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 353 bits (907), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 208/459 (45%), Positives = 295/459 (64%), Gaps = 12/459 (2%) Query: 8 LPLLLAACQSMAPTYQRPAAPVAAHYPQQPAGME-----AEAQALGWQAYFRDPQLQALI 62 L +L C S+AP Y+RP PV+ +P Q E A + W+ +F D L +I Sbjct: 18 LSSILVGC-SLAPVYERPDLPVSKTWPDQRLANERNSPDVTASEIDWKEFFIDQNLSQVI 76 Query: 63 TQALANNRDLRVAALRVEEARALYGIQRADLLPSIGAQVGVDRSRTPADLNLTQRPLVGS 122 AL NNRDLRVAAL ++ ARALYG+Q AD LPS+G R RTPADLN V S Sbjct: 77 QIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLNDKGFSDVTS 136 Query: 123 AYQAGLGLSNWEIDLWGRLRSLSDAALQSALASEATRRAAALSLVAQVADAYLELAELDE 182 Y AG+G++++E+D +GR+++LS AAL+ +A++ RR+A ++L+++VA Y LA D Sbjct: 137 TYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRYQALAA-DH 195 Query: 183 RL-AIARDTIASRQESYRIFSRRVEVGATSRLNLTQIETLLTQAQALGAQLEQLRAQRVN 241 RL +A +T+++R +S+ +E GA+S L+L Q E+LL A+ AQ + RA N Sbjct: 196 RLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTRQRAVDQN 255 Query: 242 ALSLLVGAPLE---LPVGQARTALNATFPELAAGTPSLLLTRRPDVVAAELRLKAANANI 298 AL LLVGA ++ LP G + AL A ++ G PS L++ RPD+ E L++ NA+I Sbjct: 256 ALRLLVGATIDPSLLPSGMS-DALPAMLADIPVGLPSDLISTRPDIRQHEAILRSENASI 314 Query: 299 GAARAAFFPSISLTGNLGTASAELSGLFRDGSQAWTFSPSITLPIFTAGRLRNNLDLAEV 358 GAARAAFFP ISLTG+LGT+S+ELSGLF GS++W+F P ++LPIF GR R NL++A+ Sbjct: 315 GAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVSLPIFDVGRNRANLNVAKA 374 Query: 359 RRDIAVANYEKTVQGAFRDVADALAARQWLTRQLAIAETAEQVQSERARLSTLRYDNGAA 418 RDIA+A YEK++Q AFR+VADALA L +L + E+ + R LS RY++G A Sbjct: 375 DRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRASTAQERAERVRYVLSKQRYESGYA 434 Query: 419 PFLDVLDAQRDLLSARQQRVQIRRALLSSAVALYAALGG 457 +L+ LDAQR L + +Q+ + A + + + LY ALGG Sbjct: 435 SYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGG 473 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 209 bits (531), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 166/461 (36%), Positives = 245/461 (53%), Gaps = 20/461 (4%) Query: 10 LLLAACQSMAPTYQRPAAPVAAHYPQQPAGMEAEAQALG-----WQAYFRDPQLQALITQ 64 L+L C ++ P YQRP APVA + + AG +A G W FRD +L AL Q Sbjct: 16 LILGGC-AVGPDYQRPDAPVAQAWKTE-AGWQASNPRDGELKGAWWEIFRDAELNALQEQ 73 Query: 65 ALANNRDLRVAALRVEEARALYGIQRADLLPSIGAQVGVDRSRTPADLNLTQ-----RPL 119 AL N + + +A RV++ARA + + P IGAQ G R+RT A+ LT + Sbjct: 74 ALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRTSAERPLTNYNSQNSSV 133 Query: 120 VGSAYQAGLGLSNWEIDLWGRLRSLSDAALQSALASEATRRAAALSLVAQVADAYLELAE 179 V + + A +S +E+DL+GR+R ++ A +A ++A L L A++A YL L + Sbjct: 134 VQNDFNAAFTVS-YELDLFGRVRRQAEGAGATAQQAQADFENTRLVLTAELAADYLVLRQ 192 Query: 180 LDERLAIARDTIASRQESYRIFSRRVEVGATSRLNLTQIETLLTQAQALGAQLEQLRAQR 239 D + + + T+ ++ ++ S R E+GA S L+L Q + L Q L+ RA+ Sbjct: 193 TDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAATQTQLTLLQDQRARY 252 Query: 240 VNALSLLVGAP---LELPVGQARTALNATFPELAAGTPSLLLTRRPDVVAAELRLKAANA 296 NA++ LVG P +LPV A T T P + P+ LL RRPD+ AAE + AANA Sbjct: 253 QNAIATLVGVPAPDFKLPVNLAVT----TAPAIPLTAPAALLERRPDIAAAERAMAAANA 308 Query: 297 NIGAARAAFFPSISLTGNLGTASAELSGLFRDGSQAWTFSPSITLPIFTAGRLRNNLDLA 356 IG AR+A+FPS+ L+G G+ + +LS LF + W+ S T IF GR N+D A Sbjct: 309 QIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIFDGGRTSANVDFA 368 Query: 357 EVRRDIAVANYEKTVQGAFRDVADALAARQWLTRQLAIAETAEQVQSERARLSTLRYDNG 416 + A+ NY ++V A ++V D L + L + L A+ A LST RY +G Sbjct: 369 KAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADRSLGLSTDRYQSG 428 Query: 417 AAPFLDVLDAQRDLLSARQQRVQIRRALLSSAVALYAALGG 457 L+V+ AQ+ LS ++Q VQ+ L + V L ALGG Sbjct: 429 ITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGG 469 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 201 bits (511), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 154/416 (37%), Positives = 225/416 (54%), Gaps = 20/416 (4%) Query: 49 WQAYFRDPQLQALITQALANNRDLRVAALRVEEARALYGIQRADLLPSIGAQVGVDRSRT 108 W F D QL LI +A +N +L +A RV++ARA+ G+ AD + A VG RS Sbjct: 66 WWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRSGN 125 Query: 109 PADLNLTQRPLVGSAYQAGLGLSNWEIDLWGRLRSLSDAALQSALASEATRRAAALSLVA 168 + R + AY E+DL+GRL S AA A EA R+ L+L + Sbjct: 126 AQGASTQYRAPLSFAY---------EVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQS 176 Query: 169 QVADAYLELAELDERLAIARDTIASRQESYRIFSRRVEVGATSRLNLTQIETLLTQAQAL 228 VA Y + LD + + T+A RQE+ + RR + G TS L++ Q +T A Sbjct: 177 DVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAE 236 Query: 229 GAQLEQLRAQRVNALSLLVG-APLE--LPVGQARTALNATFPELAAGTPSLLLTRRPDVV 285 +++ RAQR +AL++L+G AP E LPV L A + +G PS LL RRPD+ Sbjct: 237 LEGVKRQRAQRDHALAILLGKAPAEFTLPV----APLAAAVVTVPSGLPSDLLERRPDIA 292 Query: 286 AAELRLKAANANIGAARAAFFPSISLTGNLGTASAELSGLFRDGSQAWTFSPSI----TL 341 A+ +L A++A IGAA+AAFFP + LTG+ G S EL LF+ S++W P + ++ Sbjct: 293 QAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTILSM 352 Query: 342 PIFTAGRLRNNLDLAEVRRDIAVANYEKTVQGAFRDVADALAARQWLTRQLAIAETAEQV 401 P+F GR ++NL A+ + VANY V F+DV D L+A + L RQL E A Sbjct: 353 PLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNS 412 Query: 402 QSERARLSTLRYDNGAAPFLDVLDAQRDLLSARQQRVQIRRALLSSAVALYAALGG 457 +RL+ RY G+A + +V+DAQR LS+++ +++ ++V L ALGG Sbjct: 413 AQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGG 468 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 165/455 (36%), Positives = 232/455 (50%), Gaps = 16/455 (3%) Query: 10 LLLAACQSMAPTYQRPAAPVAAHYPQQPAGMEAEAQAL----GWQAYFRDPQLQALITQA 65 LLLA C + A T Q VA + Q A ++A W F +L +L+ Sbjct: 11 LLLAGCATQA-TQQTLVPEVAPQWRQPQANVDATGTTSVLTRDWWRSFGSSELDSLLETV 69 Query: 66 LANNRDLRVAALRVEEARALYGIQRADLLPSIGAQVGVDRS-RTPADLNLTQRPLVGSAY 124 + D+ A RV +A+A I A LLP + G R+ R D N T G+ Y Sbjct: 70 QVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNGTA---TGTVY 126 Query: 125 QAGLGLSNWEIDLWGRLRSLSDAALQSALASEATRRAAALSLVAQVADAYLELAELDERL 184 QAGL + +E+D WGR R++ D+A A+E R L++ A VA ++L+ L ER+ Sbjct: 127 QAGLS-ATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVGLRERV 185 Query: 185 AIARDTIASRQESYRIFSRRVEVGATSRLNLTQIETLLTQAQALGAQLEQLRAQRVNALS 244 AIA ++AS Q + R GA + L L Q +L A + Q + L+ Sbjct: 186 AIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDSLTTLA 245 Query: 245 LLVGAPLELPVGQARTALNA-TFPELAAGTPSLLLTRRPDVVAAELRLKAANANIGAARA 303 +L+G L V A T LN P + AG P+ LL RRPD+ AE +L A+ANI AARA Sbjct: 246 VLLGRNPSLLV-LAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANIIAARA 304 Query: 304 AFFPSISLTGNLGTASAELSGLFRDGSQAWTFSPSITLPIFTAGRLRNNLDLAEVRRDIA 363 A P ISL G++ S +S +F + ++ + + PIF AGRL DLA +R+ Sbjct: 305 AMLPRISLGGDITAGSNRVSSVFDN--PVYSLAAGLAAPIFNAGRLAAGRDLALAQREEL 362 Query: 364 VANYEKTVQGAFRDVADALAARQWLTRQLAIAETAEQVQSERA-RLSTLRYDNGAAPFLD 422 +ANY + + AF DV AL A + Q IA+ E Q++RA L+ RY GA L Sbjct: 363 LANYRRAIVAAFGDVEVALNAVAGIDAQR-IAQEEELRQAQRAFNLAESRYRAGAETSLT 421 Query: 423 VLDAQRDLLSARQQRVQIRRALLSSAVALYAALGG 457 +LDAQR L +A+ Q+R L +AV+LY ALGG Sbjct: 422 LLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGG 456 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 833,950 Number of extensions: 28312 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 13 Length of query: 471 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 384 Effective length of database: 899,382 Effective search space: 345362688 Effective search space used: 345362688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)