BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1675.p (281 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 100 1e-22 gi|152981638|ref|YP_001353293.1| LysR family transcriptional reg... 73 2e-14 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 64 8e-12 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 62 3e-11 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 60 1e-10 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/288 (31%), Positives = 138/288 (47%), Gaps = 26/288 (9%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 LD +++FV + SFTRAA+++ TQS VS ++++LEE+ LL R+ R V + + Sbjct: 2 LDPILLRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPE 61 Query: 65 GQQFLPVARELLAAHERALEQ----LEEGPLRFAVGISDHVAGASLPRALAQVHGVDPGV 120 G+ L AR +L + A+EQ +E+G ++ +G+ + A +L LA G PG+ Sbjct: 62 GESLLGYARRILQLMDEAVEQVTQSVEQGEIQ--LGVPEDFAAHALTPVLAAFAGNYPGI 119 Query: 121 LVEVRVASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWFAHPEAQCWAGP--- 177 +E+ SHDL +++QG+LD +V++ G W PE CW Sbjct: 120 RLEITSGLSHDLYRMFQQGKLDLALVKQRKDSAPGI------ASW---PEPLCWVDSLNR 170 Query: 178 --ALR----VATFSSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALL 231 ALR + F R LD G W F+ + +V AAV GL +S L Sbjct: 171 PAALRDPVPLVAFPIGGLYRNEMTHALDAIGRRWRIGFVSTSLASVSAAVQDGLGISLLP 230 Query: 232 HRSAPPAAVEV-GERLGLPSLPLAQVMLHSRLKEPRTQAALRA-LVAA 277 R A +V G G LP ++ LH++ + L A LVAA Sbjct: 231 RRMAQAGQHKVLGAADGFAGLPDLELTLHAQSEASTHSKTLAAELVAA 278 >gi|152981638|ref|YP_001353293.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 115/264 (43%), Gaps = 26/264 (9%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLER-TPRRVRLSS 63 +DL +++ FV AE SF AAE + QS V+ +KKLE+ +G +L+ER TP R SS Sbjct: 1 MDLKSLRLFVAVAETGSFVAAAERHHTVQSNVTAHIKKLEDEVGAQLIERGTP--ARPSS 58 Query: 64 QGQQFLPVARELLAAHERALEQLEEGPL--RFAVGISDHVAGASLPRALAQVHGVDPGVL 121 G + A ++ AH+ AL + G + VG + LP L H P V Sbjct: 59 AGFALMAYAERMIQAHDEALALFKNGEVSGSLRVGAMETTTALRLPPLLTLFHASHPEVD 118 Query: 122 VEVRVASSHDLMPLYEQGELDAVIVR---REPRQRGGKLVMQERIGWFAHPEAQCWAGPA 178 +++ + L+ +G D V + PR K +E + A P + Sbjct: 119 LKLTTGPTAKLVAGLNEGRFDCVFIAGKLENPRLYQYKAYREELVLVSASPMKSMPSADT 178 Query: 179 LRVAT---FSSTCGIRE-----------LALRRLDEAGIDWIEVFIGGGILAVGAAVSAG 224 LR +T F C R+ + R +D +D I +G G+ G A+ Sbjct: 179 LRASTFLVFGQGCSYRQRVDVLLADSGVFSSRMVDFGSLDAILGCVGAGM---GYALMPK 235 Query: 225 LAVSALLHRSAPPAAVEVGERLGL 248 + A HR P ++++ RLG+ Sbjct: 236 VVFDAHKHRF-PIYSLKLPSRLGV 258 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 64.3 bits (155), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 8/126 (6%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 ++L ++ F+ AA+ QSFTRA+E+L TQ +S ++K++E+ LG +L +R R V+L++ Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 65 GQQFLPVARELLAAHE------RALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDP 118 G+ F A+ L + LE L+ G R G+ LP LA + V P Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHG--RVTFGVLSSFGTFHLPPILADFNKVYP 118 Query: 119 GVLVEV 124 G+ + V Sbjct: 119 GIKITV 124 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 5 LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64 + L ++AFV AE FT AAE L +QS++SL ++ LE LG RL +R RR+ L+ Sbjct: 3 ITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDA 62 Query: 65 GQQFLPVARELL------AAHERALEQLEEGPLRFAVGISDHVAGASLPRALAQVHGVDP 118 G LPVA++ L + R L L++G + A G S H A +P L + P Sbjct: 63 GHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAG-SLH-AATVIPDLLKSFNRRYP 120 Query: 119 GVLVEVRVASSHDLMPLYEQGELDAVI 145 G+ V V + + L G +D I Sbjct: 121 GIRVIVEDVAERQVRELIVAGTVDVGI 147 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 1 MQRPLD---LDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPR 57 MQR D L +++ F LAAE SFT AA T +AVS + +LE RLG RL RT R Sbjct: 1 MQRNFDDVLLGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTR 60 Query: 58 RVRLSSQGQQFLPVARELLAAHERALEQLEEGPLR 92 ++RL+ G+ + RE LA A Q+ G L+ Sbjct: 61 QIRLTDGGRVYFEQCREALAQLVDAERQVSGGQLK 95 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 458,032 Number of extensions: 14376 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 13 Length of query: 281 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 199 Effective length of database: 917,867 Effective search space: 182655533 Effective search space used: 182655533 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)