BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1671.p (398 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 635 0.0 gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 166 3e-42 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 155 6e-39 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 144 8e-36 gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 128 6e-31 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 303/398 (76%), Positives = 345/398 (86%), Gaps = 1/398 (0%) Query: 1 MKLENPAPLQWQFSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKVAFD 60 MK+E+P P+ WQF++RAE ++SS IREILK+TMRPDI SFAGGLPSP TFPVEHMK AFD Sbjct: 1 MKIEHPTPINWQFAKRAEQLQSSVIREILKITMRPDIISFAGGLPSPETFPVEHMKAAFD 60 Query: 61 RVLSQQGKMALQYGPTDGYLPLREWIAASLSSDGAQITPEQVLMVSGSQQGLDLLGKVLI 120 VLS+QGK+ALQYGP+DGY PLREWIA SLS +GA ITP+QVLMVSGSQQ LDLLGKVLI Sbjct: 61 NVLSRQGKIALQYGPSDGYAPLREWIADSLSIEGATITPDQVLMVSGSQQALDLLGKVLI 120 Query: 121 DEGSKVLVETPSYLGALQAFALYGAKFESVPSDESGLQPETIEAIAAGARMLYSLPNFQN 180 +E SKVLVETPSYLGALQAF++Y +F SVP+D+ GL PE ++ IA GAR+LY+LPNF N Sbjct: 121 EENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGLLPEAVDGIADGARLLYALPNFHN 180 Query: 181 PTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYRNAPLPKMLSMNPAGVIYMGSFSK 240 PTGRT+ VERR+ LVETCAR GLPLIEDDPYGALSYR PLPKML+MNP+GVIYMGSFSK Sbjct: 181 PTGRTMSVERRIALVETCARRGLPLIEDDPYGALSYRAEPLPKMLTMNPSGVIYMGSFSK 240 Query: 241 VLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLY 300 VLTPGIRLGYVV P PLI K+EQAKQA DLHT+QLTQMVVYEAIKDGFL +H+P+IR LY Sbjct: 241 VLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLAEHIPSIRTLY 300 Query: 301 GDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAP 360 +QCQ MLDAL ++ P W+KPEGGMFIWVTLP+HID LL EA+ Q KVAFVPGAP Sbjct: 301 ANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTLPKHIDCMQLLEEAIAQ-KVAFVPGAP 359 Query: 361 FYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIAAKL 398 FYAN +KNTLRLSFVTVPPE+IR GV +L KLIAAK+ Sbjct: 360 FYANEPEKNTLRLSFVTVPPEKIREGVSKLAKLIAAKI 397 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/395 (29%), Positives = 198/395 (50%), Gaps = 24/395 (6%) Query: 12 QFSQRAEAM-KSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKVAFDRVLSQQGKMA 70 + SQR +AM +S +R+ T RP FA G+P +FP++ + +VL + G A Sbjct: 112 RLSQRGKAMFQSGGVRDFF--TPRP----FAPGVPETRSFPLQTWERLQRQVLKEYGTQA 165 Query: 71 LQYGPTDGYLPLREWIAASLSSD-GAQITPEQVLMVSGSQQGLDLLGKVLIDEGSKVLVE 129 L + P G LR IA ++ + GA+ +PE+VL+++ SQQ L L VL+D G ++ +E Sbjct: 166 LLHSPPQGMEQLRRAIADYVNLERGARASPERVLVLTSSQQALTLCATVLLDAGERIFIE 225 Query: 130 TPSYLGALQAFALYGAKFESVPSDESGLQPETIEAIAAGA----RMLYSLPNFQNPTGRT 185 P Y GA +AF G + VP D GL+ E + +A R ++ P+ Q PTG T Sbjct: 226 DPVYHGARKAFDAAGLECVPVPLDADGLRVERMLELAQTTDQVPRAVFLTPSHQFPTGAT 285 Query: 186 LPVERRLKLVETCARLGLPLIEDDPYGALSYRNAPLPKMLSMNP-AGVIYMGSFSKVLTP 244 L ++RRL ++E + +IEDD Y P + ++ IY+G+F+K L P Sbjct: 286 LALDRRLAVIEWARQQQGWIIEDDYDSEFHYDGKPTACVQGLDQYERTIYIGTFTKSLFP 345 Query: 245 GIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQC 304 G+R+GY+V P L+ M A+ D H+A + Q+ + I+ G H+ T+R +Y ++ Sbjct: 346 GLRIGYMVLPSQLVAPMTVARTLLDGHSAPIPQLTLARFIEGGHFGAHIRTMRAVYAERR 405 Query: 305 QAMLDALQQYFPASCSWSKPEGGM-----FIWVTLPEHIDAGALLNEAVEQEKVAFVPGA 359 ++ ++ + P GGM FI +PEH EA + + + Sbjct: 406 DVLVRLVRLHLSDFVEARVPTGGMQMSCVFIR-DIPEHAAV-----EAARKAGIDVLGLT 459 Query: 360 PFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLI 394 +A+ K L + F P ++ + +L +++ Sbjct: 460 GLHASKRHKTGLLMGFAAHAPHELEIAIRKLAQVL 494 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 155 bits (391), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 183/382 (47%), Gaps = 16/382 (4%) Query: 22 SSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKVAFDRVLSQQGKMALQYGPTDGYLP 81 S + E+L+ ++ F PSPL FP+ + A + Q + T G Sbjct: 93 SERVFEVLESAKMRELVPFGSAFPSPLLFPMARLARAMASSVQQLDPWSAVDDLTPGNPQ 152 Query: 82 LREWIAASLSSDGAQITPEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFA 141 LR IA +DG I +++++ +G+ L+L + G VLVE+P++ ALQA Sbjct: 153 LRRQIALRYLADGLHIHTDEIVITNGALDALNLCLAAVTRPGDAVLVESPTFYAALQALE 212 Query: 142 LYGAKFESVPSDESGLQPETIEAIAAGARML--------YSLPNFQNPTGRTLPVERRLK 193 G VP+ P +AA AR + + + FQNP G +P E++ Sbjct: 213 RNGLHAIEVPT-----HPREGIDLAALARAIERHQPKACWLMTTFQNPLGSLMPDEKKRD 267 Query: 194 LVETCARLGLPLIEDDPYGALSYRNA-PLPKMLSMNPAGVIYMGSFSKVLTPGIRLGYVV 252 LV A+ +PLIEDD YG L + + P+P + V++ SFSK L PG R+G+ Sbjct: 268 LVTLLAQHEIPLIEDDVYGELYFGDKRPMPAKAFDSKGLVMHCSSFSKCLAPGYRVGW-A 326 Query: 253 APRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQ 312 AP + + K T L + Q + ++ G D+H+ +R Q ++A+ Sbjct: 327 APGRFTRAVARRKLTTTLAASAPAQAALATYLEKGGYDKHLRQLRHTLSVQQTQFMEAIA 386 Query: 313 QYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLR 372 + FPA ++P+GG F+W+ LP ++A L +A+ Q ++ PG F A+ N +R Sbjct: 387 RSFPAGTQATRPKGGYFLWLELPAKVNALELHRQALAQ-GISLAPGPIFSAHHGFTNCIR 445 Query: 373 LSFVTVPPEQIRAGVERLGKLI 394 L++ V + A + LG+L+ Sbjct: 446 LNYGHVWDARSEAALASLGQLV 467 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 144 bits (364), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 6/355 (1%) Query: 45 PSPLTFPVEHMKVAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSSDGAQITPEQVLM 104 P P FP E + + +Q K + G+ L IA +G+ I P ++++ Sbjct: 118 PDPSLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVV 177 Query: 105 VSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAK-FESVPSDESGLQPETIE 163 G+ + ++L + + G V VE+P++ L A G + E G+ +E Sbjct: 178 TVGATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLAALE 237 Query: 164 AIAAGARM--LYSLPNFQNPTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYRNAPL 221 AI ++ +PNFQNP G +P E++ LVE R +P+IE+D Y L + + Sbjct: 238 AILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGDVHP 297 Query: 222 PKMLSMNPAG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVV 280 + S + G V++ SFSK LT R+G+ + P ++E+ K L T + Q+ + Sbjct: 298 TSLKSYDTEGLVLHCASFSKSLTSAYRIGWAM-PGRYRDQVEKLKFLNTLTTPTIPQLAI 356 Query: 281 YEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDA 340 E ++ + H+ IRK+Y Q M A++++FP S+P+GG +WV LP +D+ Sbjct: 357 AEYLEHDGYEHHLRHIRKVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVELPPQVDS 416 Query: 341 GALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIA 395 L A+ Q+ + PG F A N +RL++ I + +GKL A Sbjct: 417 MKLYELAL-QQGITIGPGYMFSATNGYNNFIRLNYSYPWSAGIEDAIRTIGKLAA 470 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 128 bits (322), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 103/342 (30%), Positives = 152/342 (44%), Gaps = 3/342 (0%) Query: 43 GLPSPLTFPVEHMKVAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLS-SDGAQITPEQ 101 GLP+ FP + L L Y GY LRE IA L S G PEQ Sbjct: 121 GLPALDAFPRKVWNRLVGHRLRGSEPARLGYPDPAGYDRLRERIATYLGVSRGVTCLPEQ 180 Query: 102 VLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDESGLQPET 161 V + +G + L+L L G + E P Y+ A K VP D +GL E Sbjct: 181 VFITTGLRNTLELTLSSLSTSGDEFWFEDPGYILARPFLQNAAVKVVPVPVDGNGLIVEE 240 Query: 162 IEAIAAGARMLYSLPNFQNPTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYRNAPL 221 + ++ A+ P+ Q+P G TL +ERR+ L+E + G +IEDD Y+ PL Sbjct: 241 GKRLSPYAKFAMVTPSHQSPLGVTLSLERRMALLEWASEAGSWIIEDDYDSEFRYQGRPL 300 Query: 222 PKMLSMNPAG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVV 280 P + S++ VIY G+FSKV+ PG+RL YVVAP + + + + L Q V Sbjct: 301 PALKSLDRNDRVIYSGTFSKVMFPGLRLAYVVAPVSAVARFQSVSYNLNAGCPYLFQASV 360 Query: 281 YEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDA 340 + I +G +H+ +R LY ++ Q+ GG+ + L EH + Sbjct: 361 ADFIAEGHFSRHLKKMRSLYAERRLVTQQVFQEVLGDRIRIDLRPGGLHMLAKLGEH-EN 419 Query: 341 GALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQ 382 LL + + +A P + +Y N + L L F V E+ Sbjct: 420 DVLLADKAREAGLALHPLSRWYVNAKPQQGLLLGFANVVDEK 461 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 980,807 Number of extensions: 42027 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 8 Length of query: 398 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 313 Effective length of database: 906,776 Effective search space: 283820888 Effective search space used: 283820888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)