BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1670.p
         (152 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981992|ref|YP_001352391.1| L-PSP family endoribonuclease [...   263   5e-72
gi|152982078|ref|YP_001354009.1| L-PSP family endoribonuclease [...   104   2e-24

>gi|152981992|ref|YP_001352391.1| L-PSP family endoribonuclease
           [Janthinobacterium sp. Marseille]
          Length = 152

 Score =  263 bits (671), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 140/151 (92%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKEGKVWVGQLGRDIGTDD 60
           MS Y+KLKALNIELPAVATPAAAYVMY Q+GNTVFLSGH+AKK+GK WVGQLG+++ T++
Sbjct: 1   MSFYDKLKALNIELPAVATPAAAYVMYVQSGNTVFLSGHIAKKDGKPWVGQLGKNMTTEE 60

Query: 61  AKQAARGVAIDLIATLQAACGGDLTRVKRIVKLMSLVNSTGDYTEHHLVTNGASELIGEV 120
           AK AARGVA+DL+ATLQAACGGDL RVKRIVK+MSLVNSTGDYTE HLVTNGASEL GEV
Sbjct: 61  AKLAARGVAVDLMATLQAACGGDLNRVKRIVKVMSLVNSTGDYTEQHLVTNGASELFGEV 120

Query: 121 FGEAGKHARSAFGVAQLPMGACVEIEMIAEI 151
           FG  G HARSAFGVAQ+P+GACVEIE+IAE+
Sbjct: 121 FGAQGVHARSAFGVAQIPLGACVEIELIAEV 151


>gi|152982078|ref|YP_001354009.1| L-PSP family endoribonuclease
           [Janthinobacterium sp. Marseille]
          Length = 156

 Score =  104 bits (260), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 88/147 (59%), Gaps = 1/147 (0%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKEGK-VWVGQLGRDIGTD 59
           MS  ++++   + LPA   P+A ++ Y      + +SG L  ++GK ++VG++   I  +
Sbjct: 1   MSASDRIREAGLVLPAFTLPSAPFLPYTLYQGLLTVSGQLPVRDGKPLFVGKVPTVISAE 60

Query: 60  DAKQAARGVAIDLIATLQAACGGDLTRVKRIVKLMSLVNSTGDYTEHHLVTNGASELIGE 119
            A+QAAR   ++++  +  A  GDL RV+R+++L   V +   YTE   + N AS LI +
Sbjct: 61  QAQQAARICVLNILGWVSHATNGDLDRVERVLRLGGFVATAEGYTEAPQIINAASTLITD 120

Query: 120 VFGEAGKHARSAFGVAQLPMGACVEIE 146
           +FG+ G HAR A GVA LP GA VE+E
Sbjct: 121 IFGDKGSHARIAIGVASLPFGAPVEVE 147


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 364,686
Number of extensions: 14414
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 77
Effective length of database: 943,746
Effective search space: 72668442
Effective search space used: 72668442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)