BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1669.p
         (315 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982607|ref|YP_001352390.1| transporter of the DMT superfam...   393   e-111

>gi|152982607|ref|YP_001352390.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 297

 Score =  393 bits (1010), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 248/294 (84%)

Query: 22  SDASPARHESRGMWLGLVGVAVFSLTLPFTRIAVAELNPAFVAFGRAVVAGLCALALLAW 81
           +++S    E++GM LG +GVA+FSLTLPFTR+AVAEL+P FVA GRAVVA  C+  LL W
Sbjct: 2   TNSSVMTQETKGMLLGAIGVALFSLTLPFTRMAVAELDPVFVALGRAVVAAACSAVLLWW 61

Query: 82  IKAPRPTTQQLRGLIITALGVVVGFPLFSSIAMRHVPAAHGAVVVGLLPLATALFGALRF 141
             A  P   QL+ L ITALGVVVGFP+FSSIAM +VPA+HGA+++G+LPLATALFGALRF
Sbjct: 62  TGAVLPNRTQLKSLFITALGVVVGFPVFSSIAMHYVPASHGAIILGILPLATALFGALRF 121

Query: 142 GERPSTGFWLAALAGSGIVIAFALREGGGSFHPADFALFAAVLTAAMGYAEGGRLAQSMG 201
           GERPS GFW+AA+ GS +V+ FAL++GGG  H AD ALF AV+ AAMGYAEGGRL+Q++G
Sbjct: 122 GERPSPGFWIAAVIGSALVVGFALQQGGGELHIADLALFIAVMAAAMGYAEGGRLSQTLG 181

Query: 202 GQNVIAWALVVALPVMLPVSLWLGWQYGVSASAPAWLAFAYVSLFSMFIGFFFWYKGLAL 261
           GQ VI+WALV+++PV+LPV++WLGW++GVSAS  AW  FAYVSLFSMFIGFFFWYKGLAL
Sbjct: 182 GQQVISWALVLSMPVVLPVTVWLGWRHGVSASPAAWAGFAYVSLFSMFIGFFFWYKGLAL 241

Query: 262 GGIARVGQVQLLQPFMSLLGAAVIADEALDASNMLFALAVIVVVAIGRRMAVRR 315
           GGIARVGQVQL+QPF++LLGAAVI  E L+    LFALA+I VVAIGR+M+++R
Sbjct: 242 GGIARVGQVQLIQPFLTLLGAAVILGEVLEWRTFLFALAIIAVVAIGRKMSIKR 295


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 556,592
Number of extensions: 20112
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 232
Effective length of database: 914,170
Effective search space: 212087440
Effective search space used: 212087440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)