BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1668.p
         (199 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981931|ref|YP_001352389.1| RhtB family protein [Janthinoba...   253   6e-69
gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...    59   3e-10

>gi|152981931|ref|YP_001352389.1| RhtB family protein
           [Janthinobacterium sp. Marseille]
          Length = 226

 Score =  253 bits (646), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/199 (61%), Positives = 157/199 (78%), Gaps = 2/199 (1%)

Query: 1   MIDALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHLLGITFGFGVLLAVCAFGI 60
           ++++LLPL  FAFVSSITPGPNNIMLTSSGI FGF RSLPH+ G+ FGF V+LA+CA GI
Sbjct: 30  IMESLLPLALFAFVSSITPGPNNIMLTSSGIRFGFVRSLPHMFGVVFGFSVILALCAAGI 89

Query: 61  GELVVALPQVVLLLKALGCAYLLYLAWQLRHMAVAQAAERALQPMSFWAAAMFQFANPKA 120
           G L+VA+P + +LLK +G  YL+YLAWQLR MA  Q  +  +QPMSF  A++FQFANPKA
Sbjct: 90  GSLIVAMPALHILLKTIGSTYLVYLAWQLRGMAFTQGDDDTVQPMSFIGASLFQFANPKA 149

Query: 121 WVMAITGASAFMPLLHEHAGRLAILIYCAVFCVVNLPCVSVWAGAGSLLRRYLEEPLWRV 180
           WVMA+TGA+AF+P +      LAI ++C +F +VNLPC+ +WAG G++LRRYL +  WR 
Sbjct: 150 WVMAVTGAAAFLPPVQPV--WLAITVFCFIFGIVNLPCIGIWAGTGAVLRRYLTQAKWRR 207

Query: 181 VFATTMIVLTLYAALAIWL 199
           +F T MI+LTLY+A AIWL
Sbjct: 208 LFCTIMIILTLYSAAAIWL 226


>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 12  AFVSSITPGPNNIMLTSSGIWFGFRRSLPHLLGITFGFGVLLAVCAFGIGELVVALPQVV 71
           A + +ITPG   I+  S G+ +G R++   +LG+  G   LL V   G+G L++A     
Sbjct: 13  AILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAGVGSLLLASEMAF 72

Query: 72  LLLKALGCAYLLYLAWQLRHMAVAQAAE------RALQPM---SFWAAAMFQFANPKAWV 122
            ++K +G  YL+YL        V  A E      R + P     F    +    NPK  +
Sbjct: 73  NIVKTIGAFYLIYLGLSQWRAKVVLAPEMQAQHARTIVPTFKKRFLHGLLTNVTNPKGVI 132

Query: 123 MAITGASAFM----PLLHEHAGRLAILIYCAVFCVVNLPCVSVWAGAGSLLRRYLEE 175
             +     F+    PLL +      +LI     CV+++  +  +A A S ++R+  +
Sbjct: 133 FMVAVLPQFIVKDAPLLPQ------LLILGVTICVIDIIVMHAYAFAASSMQRFFRD 183


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 423,510
Number of extensions: 14768
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 120
Effective length of database: 928,958
Effective search space: 111474960
Effective search space used: 111474960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 127 (53.5 bits)