BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1667.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979956|ref|YP_001354806.1| threonine dehydratase [Janthino...   125   3e-30

>gi|152979956|ref|YP_001354806.1| threonine dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  125 bits (315), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 15  VYAGMASTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYLHHLARQQPQLSGVI 74
           VY     +P    P L+Q +G +++ K E+     +FK+RG    + HL   Q +  GVI
Sbjct: 14  VYDVAVESPLELAPTLSQRVGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMK-RGVI 72

Query: 75  SATRGNHGQSVGLSARRFGIAATIVVPEGNSREKNVAMRALGVDLIEHGREFQDSREHAQ 134
            A+ GNH Q V LSA + G  A IV+P      K  A+ A G +++  G  + D+ +HA 
Sbjct: 73  CASAGNHAQGVALSATKLGCRAVIVMPTTTPSVKVEAVNARGGEVVLFGDSYSDAYQHAL 132

Query: 135 QLAAERQWHMI-PSLHRNLVAGVATYWMELFTSQPA-LDLVLVPVGQGSGICGAVAARNA 192
            L  + +   + P    +++AG  T  ME+       +  + VP+G G  I G  A   A
Sbjct: 133 TLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHAGPIHAIFVPIGGGGLIAGVAAYVKA 192

Query: 193 LGLKTRIIGVVSAHALAYKLSFDAGRKIEAPVTTHLADGVACRVPDQAALEVMFAHVDEV 252
           +  + ++IGV ++ + A   S  AGR++        ADG A ++  +    +   +VDE+
Sbjct: 193 VRPEIKVIGVQTSDSDAMARSLQAGRRVTMADVGLFADGTAVKLVGEETFRLAKQYVDEI 252

Query: 253 VAVTDDEVMDAMKLAFIATHNVVEGAGACALAAALQLRTRLRGKK-------IGVTFSGG 305
           + V  +EV  A+K  F  T +++E +GA A+A A     R R  K       +    SG 
Sbjct: 253 IVVDTNEVCTAIKDVFQDTRSILEPSGALAVAGAKAYIERARASKKPLKNETLVTIASGA 312

Query: 306 NVDHD 310
           N++ D
Sbjct: 313 NMNFD 317


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 734,879
Number of extensions: 30357
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)