BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1666.p (498 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 712 0.0 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 145 4e-36 gi|152980958|ref|YP_001351821.1| GntR family transcriptional reg... 137 1e-33 gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 113 3e-26 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 108 5e-25 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/496 (68%), Positives = 408/496 (82%), Gaps = 11/496 (2%) Query: 1 MTNTVKHLHSVPTTTVASDSALPGWPLLLRESGESLVDQIVRGVRARIDDKLLRGGVRMP 60 MTNT K + P TT A PLL R +G SL++QIV+ + +RIDDK+LR G RMP Sbjct: 1 MTNTAKSPSTTPATTEAPR------PLLSRTAGSSLIEQIVQLITSRIDDKILRTGARMP 54 Query: 61 SIRQFAEANEISRFTVVEAYDRLVAQGYLESRRGSGFYVKERAPMGGAYGSTAAQAEAQA 120 SIRQF++ +++SRFTVVEAYDRLVA G LESRRGSGFYV++RAPM T Q+ Sbjct: 55 SIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGSGFYVRDRAPM-----LTPRAQGLQS 109 Query: 121 EAGRGLDVVWLVRNMFRQLPPHKMPGGGLLPPDWLDGELIANALRAVSRDNPALLLGYGT 180 A + +DVVWLVRNMFRQLPP KMPG GLLP +WLDG+L+ANALRAVSR NP LLL YG Sbjct: 110 AAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDLVANALRAVSRQNPNLLLQYGI 169 Query: 181 PLGFLPLRQQLQLKLAELEIAAAPEQIVLTTGVTQGLDTVARHFLRPGDVVFVDDPAWFL 240 P GFLPLRQQLQLK+AELEI+A P+Q V T GVTQGLD VARH+++PGD +FVDDP WFL Sbjct: 170 PQGFLPLRQQLQLKMAELEISATPDQFVTTAGVTQGLDLVARHYIQPGDTIFVDDPGWFL 229 Query: 241 MFGSFAALGAKIVGIPRLGDGPDIAHLREMAALHKPKLYVINSVLHNPTSTSMSAAKAFQ 300 MFGSFAALGAK+VGIPRL DGPDIA L +A LH+PKL++INS+LHNPTSTS+SAAKAFQ Sbjct: 230 MFGSFAALGAKVVGIPRLPDGPDIAQLTALAELHRPKLFIINSILHNPTSTSLSAAKAFQ 289 Query: 301 VLRIAEEHDFILVEDDIYCDMHPGSAVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGY 360 VL+IAE++DF++VEDDIYCDMHPG+AVQ ATRIAALDQL RVIYLGGFSKTL+ANLRVG+ Sbjct: 290 VLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLNRVIYLGGFSKTLAANLRVGF 349 Query: 361 IATSAELARSLADRKLLSTLTTGEIGERVAYKVLSEGHYRKHTERLRARLNGAREKVMRH 420 IATS E+AR LADRK+L+ LTT EI ERV Y++LSEGHYRKHT+RLR +LN R+K +R Sbjct: 350 IATSPEIARQLADRKMLTALTTTEITERVVYRILSEGHYRKHTDRLRTKLNAVRDKTIRQ 409 Query: 421 LEKLGMEVGDPPPCGMFLWVDTGRDTNVLTEEAMEQGFLLAPGSLFSPSQLPSTHMRINV 480 +E++G+++ P GMF W D G D +L E+AMEQG+LLAPGSLFSP+QLPST+MR NV Sbjct: 410 MERIGIKIHFHTPAGMFAWTDVGCDATILAEKAMEQGYLLAPGSLFSPNQLPSTNMRFNV 469 Query: 481 ASMSDPGIWRFLERAM 496 A+M+DPGI RFLER + Sbjct: 470 AAMADPGIMRFLEREI 485 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 145 bits (367), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 127/451 (28%), Positives = 204/451 (45%), Gaps = 25/451 (5%) Query: 48 IDDKLLRGGVRMPSIRQFAEANEISRFTVVEAYDRLVAQGYLESRRGSGFYVKERAPMGG 107 I D +LR G R+PS+RQ + + +S TV +AY L A+G + +R SG+YV G Sbjct: 15 IQDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLIRARERSGYYV------AG 68 Query: 108 AYGSTAAQAEAQAEAGRGLDVVWLVRNMFRQLPPHKM----PGGGLLP-PDWLDGELIAN 162 A + E ++ V + +F L KM P G P P +A Sbjct: 69 AAQKLPPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFPSPLLFPMARLAR 128 Query: 163 AL-RAVSRDNPALLLGYGTPLGFLPLRQQLQLKLAELEIAAAPEQIVLTTGVTQGLDTVA 221 A+ +V + +P + TP G LR+Q+ L+ + ++IV+T G L+ Sbjct: 129 AMASSVQQLDPWSAVDDLTP-GNPQLRRQIALRYLADGLHIHTDEIVITNGALDALNLCL 187 Query: 222 RHFLRPGDVVFVDDPAWFLMFGSFAALGAKIVGIP-RLGDGPDIAHLREMAALHKPKLYV 280 RPGD V V+ P ++ + G + +P +G D+A L H+PK Sbjct: 188 AAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLAALARAIERHQPKACW 247 Query: 281 INSVLHNPTSTSMSAAKAFQVLRIAEEHDFILVEDDIYCDMHPGSA-VQPATRIAALDQL 339 + + NP + M K ++ + +H+ L+EDD+Y +++ G PA A D Sbjct: 248 LMTTFQNPLGSLMPDEKKRDLVTLLAQHEIPLIEDDVYGELYFGDKRPMPAK---AFDSK 304 Query: 340 QRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVAYKVLSEGHY 399 V++ FSK L+ RVG+ A R++A RKL +TL + L +G Y Sbjct: 305 GLVMHCSSFSKCLAPGYRVGW-AAPGRFTRAVARRKLTTTLAASAPAQAALATYLEKGGY 363 Query: 400 RKHTERLRARLNGAREKVMRHLEK---LGMEVGDPPPCGMFLWVDTGRDTNVLT--EEAM 454 KH +LR L+ + + M + + G + P G FLW++ N L +A+ Sbjct: 364 DKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATR-PKGGYFLWLELPAKVNALELHRQAL 422 Query: 455 EQGFLLAPGSLFSPSQLPSTHMRINVASMSD 485 QG LAPG +FS + +R+N + D Sbjct: 423 AQGISLAPGPIFSAHHGFTNCIRLNYGHVWD 453 >gi|152980958|ref|YP_001351821.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 490 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 118/464 (25%), Positives = 209/464 (45%), Gaps = 19/464 (4%) Query: 36 LVDQIVRGVRARIDDKLLRGGVRMPSIRQFAEANEISRFTVVEAYDRLVAQGYLESRRGS 95 L +++ + + I++ + R G R+PSIRQ ++ + +S TVV A+ L ++G +ES S Sbjct: 3 LYEKLAKDIEELIENGVFRPGERLPSIRQTSQHHRLSITTVVHAFLLLESKGVIESHPQS 62 Query: 96 GFYVKERAPMGGAYGSTAAQAEAQA--EAGRGLDVVWLVRNMFRQLPPHKMPGGGLLP-P 152 G++V R P A G + +DV LV + R + +P G P P Sbjct: 63 GYFV--RVPPQSANGKVPQELRTSQPLAISSQVDVSHLVLSTLRSITNDAVPLGSPYPDP 120 Query: 153 DWLDGELIANALRAVSRDNPALLLGYGTPLGFLPLRQQLQLKLAELEIAAAPEQIVLTTG 212 E I ++R + P G L +Q+ + E A P +IV+T G Sbjct: 121 SLFPSEKINRYAYGITRRQTKWGVTDALPPGHPDLIRQIARRYLENGSAIDPNEIVVTVG 180 Query: 213 VTQGLDTVARHFLRPGDVVFVDDPAWFLMFGSFAALGAKIVGI---PRLGDGPDIAHLRE 269 T+ ++ + + GD+V V+ P ++ M + +G + + + PR +G D+A L Sbjct: 181 ATEAINLCLQAVGKAGDIVAVESPTFYAMLHAIERMGMRAIEVATHPR--EGIDLAALEA 238 Query: 270 MAALHKPKLYVINSVLHNPTSTSMSAAKAFQVLRIAEEHDFILVEDDIYCDMHPGSAVQP 329 + H+ ++ NP M K ++ + ++E+D+Y +++ G V P Sbjct: 239 ILDQHQIAACMVMPNFQNPLGFQMPDEKKRALVELITRRQVPVIENDVYNELYFGD-VHP 297 Query: 330 ATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERV 389 T + + D V++ FSK+L++ R+G+ A + K L+TLTT I + Sbjct: 298 -TSLKSYDTEGLVLHCASFSKSLTSAYRIGW-AMPGRYRDQVEKLKFLNTLTTPTIPQLA 355 Query: 390 AYKVLSEGHYRKHTERLRARLNGAREKVMRHLEKLGMEVG---DPPPCGMFLWVD--TGR 444 + L Y H +R ++ + +MR K G P G LWV+ Sbjct: 356 IAEYLEHDGYEHHLRHIR-KVYAQQANIMRAAVKRFFPEGTQTSEPQGGYVLWVELPPQV 414 Query: 445 DTNVLTEEAMEQGFLLAPGSLFSPSQLPSTHMRINVASMSDPGI 488 D+ L E A++QG + PG +FS + + +R+N + GI Sbjct: 415 DSMKLYELALQQGITIGPGYMFSATNGYNNFIRLNYSYPWSAGI 458 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 113/431 (26%), Positives = 184/431 (42%), Gaps = 40/431 (9%) Query: 6 KHLHSVPTTTVASDSALPGWPLLLRESGESLVDQIVRGVRARIDDKLLRGGVRMPSIRQF 65 KH T D A G PL R + R +R I D L G +P+ R Sbjct: 3 KHAQLESVKTWLIDPAHEGLPLHAR---------VQRAIRQLILDGALDVGRPLPASRAL 53 Query: 66 AEANEISRFTVVEAYDRLVAQGYLESRRGSGFYVKERAPMGGAYGSTAAQAEAQ------ 119 A++ +SR TV AY +L A+G++E R GSG YV ER G + Sbjct: 54 AQSLGVSRDTVESAYGQLHAEGFIERRVGSGSYVSERMQRLPGRGRPRRTVVERGTTTRL 113 Query: 120 AEAGRGLDVVWLVRNMFRQLPPHKMPGGGLLPPDWLDGELIANALRAVSRDNPALLLGYG 179 ++ G+ + VR+ F P PG +P E + L+ R +L YG Sbjct: 114 SQRGKAMFQSGGVRDFFTPRP--FAPG---VP------ETRSFPLQTWERLQRQVLKEYG 162 Query: 180 T-------PLGFLPLRQQLQLKLAELE--IAAAPEQIVLTTGVTQGLDTVARHFLRPGDV 230 T P G LR+ + LE A+PE++++ T Q L A L G+ Sbjct: 163 TQALLHSPPQGMEQLRRAIA-DYVNLERGARASPERVLVLTSSQQALTLCATVLLDAGER 221 Query: 231 VFVDDPAWFLMFGSFAALGAKIVGIPRLGDGPDIAHLREMAAL--HKPKLYVINSVLHNP 288 +F++DP + +F A G + V +P DG + + E+A P+ + P Sbjct: 222 IFIEDPVYHGARKAFDAAGLECVPVPLDADGLRVERMLELAQTTDQVPRAVFLTPSHQFP 281 Query: 289 TSTSMSAAKAFQVLRIAEEHDFILVEDDIYCDMHPGSAVQPATRIAALDQLQRVIYLGGF 348 T +++ + V+ A + ++EDD + H +P + LDQ +R IY+G F Sbjct: 282 TGATLALDRRLAVIEWARQQQGWIIEDDYDSEFHYDG--KPTACVQGLDQYERTIYIGTF 339 Query: 349 SKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVAYKVLSEGHYRKHTERLRA 408 +K+L LR+GY+ ++L + + L + I + + + GH+ H +RA Sbjct: 340 TKSLFPGLRIGYMVLPSQLVAPMTVARTLLDGHSAPIPQLTLARFIEGGHFGAHIRTMRA 399 Query: 409 RLNGAREKVMR 419 R+ ++R Sbjct: 400 VYAERRDVLVR 410 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 154/345 (44%), Gaps = 15/345 (4%) Query: 146 GGGLLPPDWLDGELIANALRAVSRDNPALLLGYGTPLGFLPLRQQLQLKLAELEIAAAPE 205 GGL P+ E + A V + L YG G+ PLR+ + L+ P+ Sbjct: 41 AGGLPSPETFPVEHMKAAFDNVLSRQGKIALQYGPSDGYAPLREWIADSLSIEGATITPD 100 Query: 206 QIVLTTGVTQGLDTVARHFLRPGDVVFVDDPAWFLMFGSFAALGAKIVGIPRLGDG--PD 263 Q+++ +G Q LD + + + V V+ P++ +F+ + V +P G P+ Sbjct: 101 QVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGLLPE 160 Query: 264 -IAHLREMAALHKPKLYVINSVLHNPTSTSMSAAKAFQVLRIAEEHDFILVEDDIYCDMH 322 + + + A L LY + + HNPT +MS + ++ L+EDD Y + Sbjct: 161 AVDGIADGARL----LYALPN-FHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGAL- 214 Query: 323 PGSAVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTT 382 +P ++ ++ VIY+G FSK L+ +R+GY+ L R L K + L T Sbjct: 215 -SYRAEPLPKMLTMNP-SGVIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHT 272 Query: 383 GEIGERVAYKVLSEGHYRKHTERLRARLNGAREKVMRHLEKLGME--VGDPPPCGMFLWV 440 ++ + V Y+ + +G +H +R + ++ L + E + P GMF+WV Sbjct: 273 SQLTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWV 332 Query: 441 DTGR--DTNVLTEEAMEQGFLLAPGSLFSPSQLPSTHMRINVASM 483 + D L EEA+ Q PG+ F ++ +R++ ++ Sbjct: 333 TLPKHIDCMQLLEEAIAQKVAFVPGAPFYANEPEKNTLRLSFVTV 377 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,119,764 Number of extensions: 44512 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 8 Length of query: 498 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 411 Effective length of database: 899,382 Effective search space: 369646002 Effective search space used: 369646002 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)