BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1664.p (567 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/pe... 717 0.0 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 140 2e-34 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 124 1e-29 gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport sy... 119 3e-28 gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPa... 117 2e-27 >gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/permease fusion protein, type I secretion pathway [Janthinobacterium sp. Marseille] Length = 585 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/555 (63%), Positives = 442/555 (79%), Gaps = 1/555 (0%) Query: 14 ALQDLRSDPSYLTLLRAYGSRFVEIIVAGVLVNLLGLLLPLYSRLIYDKVLGNHIPETLW 73 AL ++ DP Y+T+LRAYG R VEI+VAG L+N+ GLLLP+YSRL+YDKV+GNHIP+TLW Sbjct: 31 ALGEITRDPMYVTMLRAYGKRMVEIVVAGFLINVFGLLLPVYSRLVYDKVIGNHIPDTLW 90 Query: 74 ALTLGMLLFIALELMLRVIRVYYTEQLAGRLDGEFDEVSARRLLTAKVQAPVGVVLARYR 133 ALTLGMLLF+ALE +LRVIR +Y EQLAG+ D +FD+ ++LL A+V PVGVVLA+YR Sbjct: 91 ALTLGMLLFLALEFVLRVIRTFYIEQLAGKFDIDFDQAVVKKLLAARVSWPVGVVLAKYR 150 Query: 134 DLSAARDLLSSNYMLLLVDLPFLVLYLVVLGLIGGHMVWVLLVGGGLLVGLQLLLKVPAN 193 D+++ARDLLSSNYML+++D PFL+LYL+ +GLIGG +VWV+LVGG LLVG QLL K+PAN Sbjct: 151 DITSARDLLSSNYMLVIIDFPFLLLYLLAIGLIGGPIVWVVLVGGTLLVGAQLLCKIPAN 210 Query: 194 DYAHAAMKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWVNT 253 DYA AM G K +KLA +VYG+ETLKT+ LQ R++ F DA + QAKSRFW + Sbjct: 211 DYASTAMTIGATKTNKLAGLVYGIETLKTSALQKRVLELFAKDAEDAGITQAKSRFWSSV 270 Query: 254 SYAVSSVGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISRATTVLSSLAALLGRIEM 313 + +SS GYTL++VATLVVGVY+VE N LTVGALIA S+L+ RA ++LSS+A +LGRI+ Sbjct: 271 GFTISSSGYTLMTVATLVVGVYMVEANALTVGALIASSMLVGRAASMLSSVAMVLGRIDA 330 Query: 314 FRRARAEFDQLFEDQPQ-RASADVLRQEMRGLIQVGNLLLHLDKKENPTLKNVSLTIQPG 372 F++AR F++LF + P + + +V RQ++ G IQV NL + E LK +S I PG Sbjct: 331 FKQARTSFEELFIEAPNAQVTNEVDRQQIDGKIQVANLSFSIKPDEPAMLKQISFVINPG 390 Query: 373 EKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPFLF 432 EK+G+VGRSGSGKSTLLR LAG+H PD G VL+DG+AV AY EVRMR I +KPQ+PFLF Sbjct: 391 EKIGLVGRSGSGKSTLLRCLAGVHAPDTGQVLMDGIAVAAYPQEVRMRSIAYKPQDPFLF 450 Query: 433 DGTVAANIFIGDRVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGNLSGGQRQMVALA 492 DGT+A+NIF+ + + +Y+ AL VS +D+L+A G+LRLDQ + APGNLSGGQRQMVALA Sbjct: 451 DGTLASNIFVDNAISTSIYQTALHVSCMDELLAGGQLRLDQLLVAPGNLSGGQRQMVALA 510 Query: 493 RVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPALLRHVERIIVID 552 R IA TP VLLLDEPTTG+DQ +E +IIERLVA+A RTLVVATHSP LL+ ++RIIVI Sbjct: 511 RAIACTPNVLLLDEPTTGIDQGTENKIIERLVAFAATRTLVVATHSPVLLKQMDRIIVIH 570 Query: 553 GGRIVADGPRDQILQ 567 G+IVADGPR QILQ Sbjct: 571 DGKIVADGPRAQILQ 585 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 119/390 (30%), Positives = 190/390 (48%), Gaps = 34/390 (8%) Query: 200 MKAGTGKIDK--------LASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWV 251 ++ G K+D+ LA + G+ +K + R F N V + V Sbjct: 298 LRNGFEKVDRIWSQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHNLVVNDR----V 353 Query: 252 NTSYAVSSVGYT-LVSVATLVV---GVYLVEENLLTVGALIACSLLISRATTVLSSLAAL 307 N +++ S T L + LVV G++ V + ++TVG L A ISR T L S++ + Sbjct: 354 NKVWSLFSPTVTFLTEIGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYTRLDSMSRI 413 Query: 308 LGRIEMFRRARAEFDQLFE-----DQPQRASADVLRQEMRGLIQVGNLLLHLDKKENPTL 362 + + ++A ++F+ A+ V +++G I + ++ + + Sbjct: 414 ---VSVTQKAATGAKRIFDILDHVSSVPEATNPVHLDKVQGKITIKDIGFRYGNR--AVI 468 Query: 363 KNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYA-PEVRMRC 421 + + LTI PGE +G+VG SGSGKSTL+ + + G +++DGV V + PE R R Sbjct: 469 RGLDLTINPGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYR-RN 527 Query: 422 IGFKPQEPFLFDGTVAANIFIGDRVPGQVYEAAL---AVSSLDDLIARGELRLDQAIKAP 478 IG QEPFLF GT+A NI G P E + + + I R D + Sbjct: 528 IGLVLQEPFLFFGTIADNIAYGK--PDASREDIIAAARAAHAHEFILRLPHGYDSMVGER 585 Query: 479 GN-LSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATH 537 G LSGG+RQ +++AR + P +L+LDE T+ VD +E I + L RT + H Sbjct: 586 GQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAH 645 Query: 538 SPALLRHVERIIVIDGGRIVADGPRDQILQ 567 + LR +RI+V+D G+IV G D++LQ Sbjct: 646 RLSTLRRADRIVVMDRGQIVEVGSHDELLQ 675 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 5/316 (1%) Query: 256 AVSSVGYTLVSVA-TLVVGVYLVE--ENLLTVGALIACSLLISRATTVLSSLAALLGRIE 312 A + V + S A +V+ + L++ +N TVG ++ + T L ++A + G ++ Sbjct: 244 ATTPVTQVMASTAVAIVIVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQ 303 Query: 313 MFRRARAEFDQLFEDQPQRASADVLRQEMRGLIQVGNLLLHLDKKENPTLKNVSLTIQPG 372 A +L + +P+R + L G + L ++ L++++L++QPG Sbjct: 304 RGLTAAEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQPG 363 Query: 373 EKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPFLF 432 E + VG SG GKSTL+ + G + G + +DGV++ + + I Q LF Sbjct: 364 ETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVLF 423 Query: 433 DGTVAANIFIGDRVPGQV-YEAALAVSSLDDLIARGELRLDQAIKAPGN-LSGGQRQMVA 490 D T+AANI GD P + AA + LD++IA L+ I G+ LSGGQRQ +A Sbjct: 424 DDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQRLA 483 Query: 491 LARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPALLRHVERIIV 550 +AR I +L+LDE T+ +D +SE + L RT +V H + + +RI V Sbjct: 484 IARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLSTIERADRIAV 543 Query: 551 IDGGRIVADGPRDQIL 566 + G IV G ++L Sbjct: 544 LAEGHIVELGSHQELL 559 >gi|152981121|ref|YP_001351944.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 612 Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 117/215 (54%), Gaps = 4/215 (1%) Query: 356 KKENPTLKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAP 415 + + P L +++L IQP + V +VG +GSGK+++ + + +G V + G V Sbjct: 369 RPDQPVLHDLNLHIQPYQTVALVGPTGSGKTSIAALIHRFYDVWDGEVKVGGQDVRDLTL 428 Query: 416 EVRMRCIGFKPQEPFLFDGTVAANIFIGDR--VPGQVYEAALAVSSLDDLIARGELRLDQ 473 + +C+G QEPFLF GT+A N+ G + QV EAA AV + D I R D Sbjct: 429 DSLGQCVGMVLQEPFLFSGTIADNMRYGLQWATREQVIEAAKAVRA-HDFIMRLPDGYDT 487 Query: 474 AIKAPG-NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTL 532 + G NLS GQRQ+++ AR + A P++L+LDE T +D +E I L RT Sbjct: 488 MLGQRGRNLSIGQRQLLSFARALLAKPKILILDEATANIDSFTELEIQRALNVLRKGRTT 547 Query: 533 VVATHSPALLRHVERIIVIDGGRIVADGPRDQILQ 567 ++ H A +R + I+V+ GRIV G D++L+ Sbjct: 548 IIIAHRLATIRDADVIVVLQKGRIVEKGSHDELLK 582 >gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 621 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 9/216 (4%) Query: 360 PTLKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRM 419 P ++ + LTI+PGEKVG+VGRSG+GKST++ L + ++G +LIDG + A+ + + Sbjct: 374 PVIEQLDLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDIEQGRILIDGQDI-AHVTQTSL 432 Query: 420 RC-IGFKPQEPFLFDGTVAANIFIG--DRVPGQVYEAALAVSSLDDLI----ARGELRLD 472 R +G Q+ L +V NI G D Q+ AA + + ++ A+G D Sbjct: 433 RAQVGMVTQDTSLLHRSVRDNILYGRPDASDEQMIAAAKRAEAHEFILTLSDAKGRTGYD 492 Query: 473 QAIKAPG-NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRT 531 + G LSGGQRQ +A+ARV+ +LLLDE T+ +D ++EA I L +T Sbjct: 493 AHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEAEAAIQTSLYQLMEGKT 552 Query: 532 LVVATHSPALLRHVERIIVIDGGRIVADGPRDQILQ 567 +V H + + ++R+IV+D G IV +G ++L+ Sbjct: 553 VVAIAHRLSTIAAMDRLIVLDKGSIVEEGTHRELLE 588 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,141,142 Number of extensions: 43882 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 71 Length of query: 567 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 479 Effective length of database: 895,685 Effective search space: 429033115 Effective search space used: 429033115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)