BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1662.p
         (457 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982253|ref|YP_001353078.1| HlyD family secretion protein [...   574   e-165

>gi|152982253|ref|YP_001353078.1| HlyD family secretion protein
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score =  574 bits (1480), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/445 (66%), Positives = 357/445 (80%), Gaps = 7/445 (1%)

Query: 16  RSKGFMRRVAPRLDRRLGELQAMPRPRLAVLTCAALLVLLVVWSIFAPIDMVVRGSGRIV 75
           R +   R+  P LDR +   + MP P++ VL   A L+LLV+W+  APIDMVVRG GRIV
Sbjct: 17  RVEASTRKAVPALDRGIDAYREMPGPKVFVLALLAGLLLLVIWAYLAPIDMVVRGQGRIV 76

Query: 76  ASEHNQVIQHLEGGIVSAILVREGAVVKKGQTLISIADVRANADLGEGRVKILGLRAKIA 135
            S+HNQ+IQHLEGGIVSAI+VREGA V+K Q LI+I DVRA++D GEGRVK+LGLRA++A
Sbjct: 77  PSDHNQIIQHLEGGIVSAIVVREGAAVRKDQVLITIRDVRASSDQGEGRVKLLGLRARVA 136

Query: 136 RLSAEASGAASLQMPADLDHDDPAVQSEQAAFAARSAKLMQELSVLREQAAQRQAELGEA 195
           RL+AEA GA  L +PAD+   DPA QSEQAAFAAR AKL  ELS+LREQ  QRQAEL E 
Sbjct: 137 RLTAEAGGATQLNLPADM-LADPAGQSEQAAFAARQAKLNGELSILREQTTQRQAELNET 195

Query: 196 ISRQKSQASELDLAQRQYKLIHNMLERSAASQLEDIQAAARVQDAQSKLAANDAMIPRLK 255
           ISRQKS   E  L Q+QY+L+H+M  +SAASQLEDIQA +R QD +S+L+A  +MIPRL+
Sbjct: 196 ISRQKSLTDEYALVQQQYQLVHSMYLKSAASQLEDIQAQSRAQDVRSRLSAASSMIPRLR 255

Query: 256 AAIAESQAKMGEAASRFRSDARTELTAAETELARLQEEIKSRNDRVSRSEVKAPMDGVVN 315
           AAI+E+QAK+ +  SRFR++AR +LT AETELARL EE+KSRNDRV RSEVKAPMDGVVN
Sbjct: 256 AAISEAQAKVTDGVSRFRAEARADLTTAETELARLSEEMKSRNDRVLRSEVKAPMDGVVN 315

Query: 316 RVMINTVGGVVRPGDPIIEMTPSDDKLVIEARISPTDRAELVPGARARVKVSAYDYGVYG 375
           R+ +NTVGGVV+PGDPI+EMTP DDK+V+EA I+PTDRAEL  G  ARVKV+AYDYGV+G
Sbjct: 316 RIFVNTVGGVVKPGDPILEMTPIDDKVVVEANINPTDRAELAIGKPARVKVTAYDYGVFG 375

Query: 376 AMEGVVTEISADTVPDDNNPRGERSYRIKIAVQRGDHALQ---RKLALMPGMTASADIIV 432
           +M+G VTEISADTVP++   +GER YR+KI V R    ++     L LMPGMTA+ADI+V
Sbjct: 376 SMQGKVTEISADTVPEE---KGERHYRVKIEVTRDPEQIKSAGNSLPLMPGMTATADIVV 432

Query: 433 GRRTVWQYLMSPLSRFGQGALREPR 457
           GRRTVWQYLMSP++RF Q ALREPR
Sbjct: 433 GRRTVWQYLMSPINRFTQSALREPR 457


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 916,624
Number of extensions: 34243
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 371
Effective length of database: 903,079
Effective search space: 335042309
Effective search space used: 335042309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)