BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1661.p
         (258 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982412|ref|YP_001353077.1| hypothetical protein mma_1387 [...   191   5e-50

>gi|152982412|ref|YP_001353077.1| hypothetical protein mma_1387
           [Janthinobacterium sp. Marseille]
          Length = 261

 Score =  191 bits (484), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/258 (48%), Positives = 165/258 (63%), Gaps = 4/258 (1%)

Query: 4   GGKEQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQMKVSKLISQGQAQVVGES 63
           GG+EQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQ K  K + + + Q    +
Sbjct: 5   GGREQNFWPGFVDALSNVVLVMIFVVVVFVVTLFYYSQKLAQFKAVKFMEKKELQEQVAT 64

Query: 64  KAKKTDTIATADSTSTNSAETARE--REKAQEIEQLKREVASLKAKLAAPPLQSDNGSLR 121
            +K    I+  D      A   ++  +E+ +EI  LK +VA L+AKL+     S  GSLR
Sbjct: 65  PSKNQPNISRLDDGQNPDAARLKQESQEQIKEIAALKGQVALLQAKLSNSST-SLQGSLR 123

Query: 122 SD-AAPSSPNAIQVKTEPNDKPVAPGLRIDANEKAVTLNFDADSTQLNEEGSRALDKSIG 180
           SD  AP+    I+            GL++D    AVTL+FD D  +L+++   AL+ ++ 
Sbjct: 124 SDEGAPTKAIQIEKSRTSTAADTLAGLKLDGRNDAVTLHFDTDGVELDKKAVAALEANLK 183

Query: 181 DWVRRAKSSQGKIVVTGVIGSGAYSESRRRAYYRTVAVRNYLIDAGVDKERVTSRVATDE 240
            W  + K+ QGK+VVTGV+G+ AY+E RRRAYYRT+AVRNYLID GV    V SRV    
Sbjct: 184 GWTEKIKTRQGKLVVTGVVGTLAYTEGRRRAYYRTIAVRNYLIDQGVAPTSVISRVVPGN 243

Query: 241 NGSGNDARVIVQYQAAAK 258
             + +D+ V++QY A+AK
Sbjct: 244 ESAESDSSVVIQYSASAK 261


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 396,861
Number of extensions: 11160
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 177
Effective length of database: 921,564
Effective search space: 163116828
Effective search space used: 163116828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)