BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1660.p
         (551 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981792|ref|YP_001353076.1| hypothetical protein mma_1386 [...   516   e-147

>gi|152981792|ref|YP_001353076.1| hypothetical protein mma_1386
           [Janthinobacterium sp. Marseille]
          Length = 553

 Score =  516 bits (1328), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 300/547 (54%), Positives = 381/547 (69%), Gaps = 35/547 (6%)

Query: 12  FVLAVSLGLAAHPAAVVWAADKLSPSGEAAVSGQAQPVRLDNTLDRPPQIRLGADPAGPS 71
           F++A  L  AA P++   A   +  S     SG+ QP     T D P Q     +   P 
Sbjct: 15  FLIASQLAFAAPPSSDNLAQSNVFRSRPG--SGE-QPF----TQDIPRQTPTPTEELAPI 67

Query: 72  ATDYRLPGLPADTPA-------------------SSAQDEILLLLRQSDPDFSGNRIALP 112
            T   L  LP+D P                     S  DEIL LLRQSD  FS   + LP
Sbjct: 68  VTPPVL-RLPSDVPKRTKADNSNAAKASENVQADGSRDDEILQLLRQSDKAFSSPAVPLP 126

Query: 113 Q-ISIVTEGETVPDLTLRSVLDLALGNSYSFAATAAQADQARYAAKATAGQLGPTLDLRA 171
             I+ +++G     L+L   L   L NSYS+AA +A A+ A Y   A  GQLGPTLD+RA
Sbjct: 127 DGIAALSDGPLQNMLSLEEALARTLQNSYSYAAASAVAEGAVYGKNAALGQLGPTLDVRA 186

Query: 172 QKGNEYSSPSSVLDPNTGQIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSLADAADL 231
           Q+G EYS+P+S+++P TG+   +  H RWD ++I RQP+FAP SY++YRK +SLA+AADL
Sbjct: 187 QRGREYSAPASIINPATGRALSSDTHIRWDNSVILRQPLFAPASYFEYRKQASLANAADL 246

Query: 232 RRDDARENLYYNAIKAYYDVMRAYATLSFSRSYAQRMGSLLDYMSKRLEGGGASRIDFER 291
           R++DARE LYY  IKA YD++R+Y  L+F+RSY +RM +L DYM+KRL+GGGAS++DFER
Sbjct: 247 RKEDAREALYYTTIKADYDLLRSYVGLTFARSYTERMDTLQDYMNKRLQGGGASKVDFER 306

Query: 292 VRGRSLTAQSAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPVVPDTSKLALQDIYE 351
           VRGR+LTA+S + EAEG LESAMV+L Q+TG + +Q+ +P  MMP+VP +S+LAL+ IYE
Sbjct: 307 VRGRALTARSTMIEAEGVLESAMVTLAQLTGVRSQQLGIPSKMMPIVPTSSRLALEQIYE 366

Query: 352 TNPGVRAARRDVDAANLELKSARAKFSPTLAVEWTQTKTRGAGGAIDTTDNSLQLTTDRR 411
            NP VRAAR+D  AAN ELKSAR++FSP  +VE +Q +T  AGG         +LTTDRR
Sbjct: 367 NNPAVRAARQDAAAANEELKSARSRFSPNFSVEVSQARTDNAGG-------DGRLTTDRR 419

Query: 412 LMMVVTMNLLNGGSDVYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAVRKRMEI 471
            M+V+ MNLLNGGSD YY KQ G+KYVEK NTA D+ERKL+EQIEINYRTL AVRKR+ I
Sbjct: 420 YMLVMNMNLLNGGSDYYYQKQIGSKYVEKVNTASDIERKLKEQIEINYRTLDAVRKRITI 479

Query: 472 SRQAYLTNANVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADISYQILRN 531
           +RQAY  NA+VADVFLEQL+ G+KQLLDVLDAYQQAY +R++ + LLF QADISYQILRN
Sbjct: 480 ARQAYQANADVADVFLEQLAVGNKQLLDVLDAYQQAYLSRVELSQLLFLQADISYQILRN 539

Query: 532 TGRASAL 538
           TGRAS+ 
Sbjct: 540 TGRASSF 546


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,083,296
Number of extensions: 40532
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 3
Length of query: 551
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 463
Effective length of database: 895,685
Effective search space: 414702155
Effective search space used: 414702155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)