BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1658.p
         (175 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982258|ref|YP_001352384.1| hypothetical protein mma_0694 [...   258   2e-70

>gi|152982258|ref|YP_001352384.1| hypothetical protein mma_0694
           [Janthinobacterium sp. Marseille]
          Length = 168

 Score =  258 bits (659), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 149/171 (87%), Gaps = 3/171 (1%)

Query: 1   MELHFINPRKNALAYLIKILSGCLILWYGLRSLGIAEPYWAMISLIIVTEPDMTVAKANF 60
           ME +FI PRKNAL Y+IKILSG LILWYGLR+LG+ EPYWAMISLIIVTEPDMTVAKANF
Sbjct: 1   MEFNFITPRKNALVYIIKILSGSLILWYGLRALGLQEPYWAMISLIIVTEPDMTVAKANF 60

Query: 61  RARVINTISGCIVSCIALVLFGPTFMAMLVALTAAVVVAMLLQNYPSNWRLGPATVVILL 120
           +AR++NTISGC+++C++L+LFG +F AML+A+T AV+VAML QNYPSNWRLGP TVVIL+
Sbjct: 61  KARLVNTISGCVIACLSLLLFGTSFFAMLIAMTLAVIVAMLWQNYPSNWRLGPVTVVILM 120

Query: 121 SAAFTGNGLHEELHLAFMRVGEVLIGSTVALLQTVVYMWWLKLRKPAGGDE 171
           SAAF+G G++EELHLAF+RV EV+ GS VALLQTV+YM   +++K    D 
Sbjct: 121 SAAFSGAGVNEELHLAFLRVSEVMAGSIVALLQTVIYM---QIQKWQQSDS 168


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 376,863
Number of extensions: 12615
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 98
Effective length of database: 936,352
Effective search space: 91762496
Effective search space used: 91762496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)