BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1655.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Jant... 337 3e-94 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 157 6e-40 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 125 2e-30 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 119 1e-28 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 97 7e-22 >gi|152982842|ref|YP_001352381.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 249 Score = 337 bits (865), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 166/249 (66%), Positives = 203/249 (81%) Query: 1 MTDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAG 60 M K++IVTGGSRGIGA A LA GYAVC++YV N+ AA+AV IR AGG AI VA Sbjct: 1 MAKKIMIVTGGSRGIGAEIATLAAADGYAVCISYVKNKAAADAVVAAIREAGGTAIAVAA 60 Query: 61 DVSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLC 120 D++ E D+LR+F T D++LG +TALVNNAGILE Q R+D M R+ R+ N+ G+ +C Sbjct: 61 DMAVEADILRLFATVDKELGTLTALVNNAGILETQMRVDQMDVARMQRIFNTNIVGTFVC 120 Query: 121 AREAVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEG 180 AREAVKRMST++GG GGAIVN+SS+AA+ GGPGEYVDYAASKGA+D T+GLAKEVA EG Sbjct: 121 AREAVKRMSTKYGGVGGAIVNISSVAARAGGPGEYVDYAASKGAVDTMTIGLAKEVANEG 180 Query: 181 IRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATG 240 IRVNAVRPG+IYT+IHASGGE GRVDR+K +VPM+RGG A EVA A +WLLSD++SY TG Sbjct: 181 IRVNAVRPGVIYTEIHASGGEPGRVDRVKASVPMQRGGEAREVAQAAIWLLSDQASYTTG 240 Query: 241 TFIDVSGGR 249 +F+DV+GGR Sbjct: 241 SFLDVTGGR 249 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 157 bits (397), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 137/247 (55%), Gaps = 7/247 (2%) Query: 2 TDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAGD 61 T KV I+TG SRGIGAA A Q G+AV +NY S+ A+A+ +++AA AI V D Sbjct: 5 TKKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKAD 64 Query: 62 VSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLCA 121 V+ DV R+F T+Q+LG+V L+NNAGIL+ S L S E R NV G+ Sbjct: 65 VANSADVRRLFDETEQKLGKVDVLINNAGILQMAS-LAETSDELFERTFSINVRGTFNTL 123 Query: 122 REAVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEGI 181 REA R++ GG +VN SS + P Y Y SK A++ T AKE+ I Sbjct: 124 REAATRLN-----DGGRVVNFSSTTVAMSLPN-YSVYTGSKAAVEVLTPIFAKEMRGRNI 177 Query: 182 RVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATGT 241 VNAV PG + TD+ +G ++ +L + P++R G +++A A+ +L+ + + G Sbjct: 178 TVNAVAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQ 237 Query: 242 FIDVSGG 248 + +GG Sbjct: 238 VLRANGG 244 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 133/249 (53%), Gaps = 10/249 (4%) Query: 1 MTDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAG 60 +T KV V GGSRGIGAA + G AV YVS+ + A+AVA +I AAGGRA+ + Sbjct: 7 LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIHA 66 Query: 61 DVSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLC 120 D S V + + GR+ LVNNAG+L + ++ E R + NV + Sbjct: 67 DSSDASAVQQAIQAAAKAFGRIDILVNNAGVLA-LAPVEDFKLEDFDRTVAVNVRSVFVA 125 Query: 121 AREAVKRMSTRHGGQGGAIVNL-SSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAE 179 +EA RH G+GG I+ + S+ A ++ G V YA SK AI T GLA+++ Sbjct: 126 TQEA-----ARHMGEGGRIITIGSTNADRMPFAGGAV-YAMSKAAIVGLTKGLARDLGPR 179 Query: 180 GIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYAT 239 GI VN V+PG + TD++ + + D LK + + R G EE+A + +L E+ Y T Sbjct: 180 GITVNNVQPGPVDTDMNPANSD--FADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYIT 237 Query: 240 GTFIDVSGG 248 G + + GG Sbjct: 238 GASLTIDGG 246 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 119 bits (299), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 129/253 (50%), Gaps = 11/253 (4%) Query: 1 MTDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAG 60 M +++TG GIG ATA + GY V V+ EA A+A ++RA G A + Sbjct: 30 MNTPTVLITGALTGIGRATAFAFAREGYRVAVSG-RREEAGNALAAELRALGNEAEFLLA 88 Query: 61 DVSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLC 120 DV E DV + T + GR+ VNNAG + + SA NV G++L Sbjct: 89 DVRFEADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLS 148 Query: 121 AREAVKRMSTRHGGQG-GAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAE 179 + ++ M QG G+I+NLSS+A K+G G V Y ASK A++ T A E AA Sbjct: 149 LKHEMRVML----AQGSGSIINLSSVAGKVGIAGASV-YVASKHAVEGLTKSAALEGAAA 203 Query: 180 GIRVNAVRPGLIYTDI---HASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESS 236 G+RVNAV PG + T++ G E + L +P R + +E+A I++L SD+ S Sbjct: 204 GVRVNAVAPGPVATEMLDRFVGGSEENKAGFLA-TIPAGRAATPDEIAQTIVFLASDKVS 262 Query: 237 YATGTFIDVSGGR 249 Y TG I V GG Sbjct: 263 YLTGQSIAVDGGH 275 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 97.4 bits (241), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 10/248 (4%) Query: 1 MTDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAG 60 ++ +V +VTG SRGIG A A + G V S E+ A + GG+ + + Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATS--ESGAAAISEYLGNGGKGVVL-- 61 Query: 61 DVSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLC 120 DV+ + + ++ G V+ LVNNAGI + Q + M E V+ N+T Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMR-MKDEEWDSVIATNLTAVGRL 120 Query: 121 AREAVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEG 180 +R ++ M G+ I+N++S+ G G+ ++YAA+K + + LA+E+ + Sbjct: 121 SRAVLRGMMKAKTGR---IINITSVVGSSGNAGQ-MNYAAAKAGVAGMSRALAREIGSRN 176 Query: 181 IRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATG 240 I VN + PG I TD+ + E ++ L VP+ R G E++A A+ +L S ++SY TG Sbjct: 177 ITVNCIAPGFIDTDMTKTLSEQ-QIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITG 235 Query: 241 TFIDVSGG 248 T + V+GG Sbjct: 236 TTLHVNGG 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 563,083 Number of extensions: 21740 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 19 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)