BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1654.p
         (166 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981569|ref|YP_001352380.1| G:T/U mismatch-specific DNA gly...   157   3e-40

>gi|152981569|ref|YP_001352380.1| G:T/U mismatch-specific DNA
           glycosylase [Janthinobacterium sp. Marseille]
          Length = 165

 Score =  157 bits (398), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 99/156 (63%), Gaps = 3/156 (1%)

Query: 1   LLASFAPVVARDTRTLILGSLPGAASLAKSQYYGHPRNAFWRLVGDVLGLDLYAMDYEDR 60
           LL  F PV+ + T  LILGS PG ASL+  QYY HPRN FW+L G ++  DL  + Y +R
Sbjct: 9   LLTGFPPVIDQHTEILILGSFPGEASLSAQQYYAHPRNQFWKLTGALINEDLVTLPYTER 68

Query: 61  LATLLAHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLALIATLPELHTIAFNGGTAGKIG 120
           L  L AHRIGLWDVIA   R GSLDS IR    ND   L    P+L  + FNG T+GK  
Sbjct: 69  LLRLSAHRIGLWDVIAACAREGSLDSAIRQAQHNDFALLKQQCPQLRRVCFNGKTSGK-- 126

Query: 121 MKALGEQARKYRVLLLPSSSPAYAAVSYAQKLEGWQ 156
            +AL  QA  +  ++LPSSSPAYA +++ QKL  W+
Sbjct: 127 QEALFAQA-GFETIILPSSSPAYALLTFEQKLAAWR 161


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 369,758
Number of extensions: 14760
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 89
Effective length of database: 936,352
Effective search space: 83335328
Effective search space used: 83335328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)