BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1650.p
         (276 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982213|ref|YP_001352379.1| hypothetical protein mma_0689 [...   417   e-118
gi|152982847|ref|YP_001353646.1| hypothetical protein mma_1956 [...    85   4e-18

>gi|152982213|ref|YP_001352379.1| hypothetical protein mma_0689
           [Janthinobacterium sp. Marseille]
          Length = 276

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/272 (74%), Positives = 227/272 (83%), Gaps = 1/272 (0%)

Query: 1   MLIRRKSIEAQANTKAGPNRRRQQLEADASKPRKPKYAPVTLSELEGVRYLHFGTEWVQG 60
           MLI+RKSIEA AN K+GP ++   + A A   RK K+APVTLSE  G+RYLHFGTEWVQG
Sbjct: 1   MLIKRKSIEADANLKSGPGKKSPPV-AKAKPVRKVKFAPVTLSEQFGIRYLHFGTEWVQG 59

Query: 61  AMRIRKPDWIELEYAQQMMAWMLFNRTPRHIVQLGLGTGALTKFSYRQFPQAQVTAVELN 120
           AMRI KPDWIELEYAQQMMAWMLFN  P+HIVQLGLGTGALTKFSY++FP+A+VTAV+LN
Sbjct: 60  AMRISKPDWIELEYAQQMMAWMLFNEKPQHIVQLGLGTGALTKFSYKRFPEARVTAVDLN 119

Query: 121 PAVITICHSMFKLPEPDERLMIIESDALDFIVHAASHGIIDALQVDLYDATARGPVLDTP 180
           P+VITIC SMFKLP  DERL +IE DAL+++   A+ G IDALQVDLYDATARGPVLDTP
Sbjct: 120 PSVITICASMFKLPPNDERLTVIEMDALEYVNDPANLGRIDALQVDLYDATARGPVLDTP 179

Query: 181 EFYQACYDSLAPGGVMTVNLFGDHPSYAKNLRAMEYAFDTVVSLPEVHDGNVVALAFKGQ 240
           EFYQAC   L P G+MTVNLFGDHPSYA+NL AM YAFDTV+SLPEVH+GNV+A+AF   
Sbjct: 180 EFYQACAACLTPDGIMTVNLFGDHPSYARNLSAMHYAFDTVISLPEVHEGNVIAIAFNST 239

Query: 241 IEFDIPELYARAALIEAQTKLPAKSWVNGIKA 272
            E DI  LY RAA I A TKLPAKSWVNGIKA
Sbjct: 240 PELDIAALYDRAAQITAATKLPAKSWVNGIKA 271


>gi|152982847|ref|YP_001353646.1| hypothetical protein mma_1956
           [Janthinobacterium sp. Marseille]
          Length = 251

 Score = 85.1 bits (209), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 48  VRYLHFGTEWVQGAMRIRKPDWIELEYAQQMMAWMLFNRTPRHIVQLGLGTGALTKFSYR 107
           +R LHF    VQ AMR+  PD + + Y Q M  ++L +  P HI+ +GLG G+L K+ Y+
Sbjct: 29  IRTLHFDERIVQSAMRLSAPDELLIHYTQAMTGFLLLHPAPEHILLIGLGGGSLLKYCYK 88

Query: 108 QFPQAQVTAVELNPAVITICHSMFKLPEPDERLMIIESDALDFIVHAASHGIIDALQVDL 167
             P  + T +E++  VI +    F +P  D RL ++ +DA  ++   A    +D + +D 
Sbjct: 89  HLPSTRFTVLEIDADVIAL-REQFMIPADDARLQVLHADARTYLREMAGEA-VDVILLDG 146

Query: 168 YDATARGPVLDTPEFYQACYDSLAPGGVMTVNLFGD 203
           +DA      L++  F++ C   L  GGV+ +N+  D
Sbjct: 147 FDANGAVEELNSYAFFEDCRRVLRDGGVLLMNMADD 182


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 679,418
Number of extensions: 28345
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 194
Effective length of database: 917,867
Effective search space: 178066198
Effective search space used: 178066198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)