BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1647.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 243 7e-66 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 223 9e-60 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 218 4e-58 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 198 3e-52 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 167 4e-43 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 243 bits (620), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 126/242 (52%), Positives = 175/242 (72%), Gaps = 8/242 (3%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKG---GE 57 +L IS L AYG +E + G+ ++V KG+++TLIG+NGAGKTTT++AI+G + P G Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTL-PNCRVEGH 63 Query: 58 VTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHD 117 + G+ I GL S ++ R LA PEGR VF MS+ +NLL+GAF R K IA D Sbjct: 64 IEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR----DDKDGIAAD 119 Query: 118 LERALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 177 +++ +FPRLKER AQ+AGTLSGGEQQMLAMARA+M +PE++LLDEPSMGL+PI+V+++ Sbjct: 120 IDKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKI 179 Query: 178 FRIISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 F +I + QG+T+LLVEQ A AL A+ YV+E+G +++HG A ++ +DP V+ AYLG Sbjct: 180 FEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 Query: 238 GG 239 G Sbjct: 240 EG 241 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 223 bits (568), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 165/238 (69%), Gaps = 4/238 (1%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 ML I + YG ++ IS++V +G++VTLIG+NGAGK+TT+RAI+G+ G + + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 G ++G ++ G++H PEGRRVF ++V +N+ +GA+ R + K + D+ER Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAY----RRKDKAKVRDDMER 131 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 + FPRL+ER Q+AGTLSGGEQQMLA+ARA+M P +++ DEPS+GLAP +V+++F + Sbjct: 132 MFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSL 191 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 I ++ +G T+L+VEQ A AAL + D GY+LENG I G + +++ +P ++ AYLGG Sbjct: 192 IREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLGG 249 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 218 bits (554), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 157/237 (66%), Gaps = 6/237 (2%) Query: 2 LTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLG 61 L + L Y KV VLH +S++V GK+ ++G+NGAGK+T +R+I G+ P+ GE+ G Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 62 GKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHD-LER 120 GKN+ G +H I G++ PEGR+VF M+V +NL LGAF + D L R Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAF-----LESSSTVVRDRLAR 118 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 E+FPRLKER AQLAGT+SGGEQ M+++ R +M P+++++DEPS+GL+P+ V E F++ Sbjct: 119 VYEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKV 178 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 I ++ G+T+LLVEQ A L ++ YGYVL G++ G A+ L ++ V++AY G Sbjct: 179 IKQINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 198 bits (503), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 10/237 (4%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L I NLHA YGK VLHGI + + G++V+L+G NGAG++TT++A GM+ G + Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAATG-TIRF 62 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 GK I GL +++IAR GL + E R +F T+SV NL+LGA +A+ + A D+ R Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGA-----QAKSRWS-ADDMYR 116 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 LFPRL+ERQ AG LSGGEQQMLA+ R +M +PE+I++DEP+ GLAP +V V Sbjct: 117 ---LFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANF 173 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 + L ++GV++LL+EQ A AL ++ YV+ +G++ G LQ D AV+ +LG Sbjct: 174 LQELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 167 bits (424), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 144/233 (61%), Gaps = 6/233 (2%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 ML ++ L+ YG L GIS+ V KGK ++L+G NG GKTT ++ + G++ G V+L Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 G++IT L H+ A G+A+ P+GR +FA ++V +NLL+G T++ K + Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGM---ATKSGKKASVIKG--E 115 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 ELFP LKE + G LSGG+QQ LA+ARA++ P++I+LDEP+ G+ P ++ ++ R+ Sbjct: 116 VYELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRV 175 Query: 181 ISRLKEQG-VTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVK 232 IS L+E+G + +LL EQ+ A +AD VL G++ G ++ +D K Sbjct: 176 ISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNVKK 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 590,522 Number of extensions: 25281 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 227 Number of HSP's successfully gapped: 60 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)