BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1646.p (655 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 248 9e-67 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 212 5e-56 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 157 1e-39 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 139 6e-34 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 138 9e-34 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 248 bits (633), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 122/248 (49%), Positives = 169/248 (68%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 +L + + +FGGL+AL+ V++ + +G ++GLIGPNG+GK+T NV+TG+Y+ G E Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMVNTPRYV 511 G+P S + P +A G+ARTFQN++LFGEMTA ENV++G H + + + + Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 512 REEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGL 571 REE R+RA +LEFVG+A A AR+L YG QR LEI RAL +P LL LDEPAAG+ Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 185 Query: 572 TAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQADP 631 A + L ++ KI+ G TI+LIEH + ++M +CD +TVLD+G+ IAEG PA VQ DP Sbjct: 186 NATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKDP 245 Query: 632 KVIEAYLG 639 VIEAYLG Sbjct: 246 AVIEAYLG 253 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 212 bits (540), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 107/255 (41%), Positives = 159/255 (62%) Query: 393 LKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEYD 452 L++ + M+ GL A++ V G + LIGPNG+GK+T NV++G +PT G V+ Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 453 GRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMVNTPRYVR 512 G I+G P I+ G+ R+FQ +F T EN+L LH V+ ++ T ++ R Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 513 EEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDEPAAGLT 572 EE R +A +L F+GL+ AN A NL YG+QRLL +G AL P +LLLDEPAAGL Sbjct: 130 EEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLN 189 Query: 573 APDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQVQADPK 632 + + ++R+I ++G+T++L+EH M +VMSI D + VL++G+ IA G P+++Q DP+ Sbjct: 190 PSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDPE 249 Query: 633 VIEAYLGSGAGDAHD 647 VI AYLGSG A + Sbjct: 250 VIRAYLGSGIEHAEN 264 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 147/256 (57%), Gaps = 4/256 (1%) Query: 389 GATLLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGV 448 G L+ V + M+FGGL AL+++++ + +G V GL+GPNGSGK+T NVLTG+Y+ T G Sbjct: 17 GGKLVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSGS 76 Query: 449 VEYDGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLVGLHHTFNSNVVDVMVNTP 508 + Y G+ + G P I GVARTFQ +L +T +N+++G + N + + Sbjct: 77 IIYKGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQRK 136 Query: 509 RYVREEQAARERAAAILEFVGLANLAN--EEARNLPYGKQRLLEIGRALGLNPSLLLLDE 566 + E A + A+L +A E +R +E+ RAL P LLLLDE Sbjct: 137 AFRAEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLDE 196 Query: 567 PAAGLTAPDIKELVAIIRKIRE--AGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKP 624 P+AG+T + + L+ I ++R +TI+LIEH M+V+ I D V ++G+KIAEG Sbjct: 197 PSAGMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGTY 256 Query: 625 AQVQADPKVIEAYLGS 640 A++ ADP V AYLG Sbjct: 257 AEITADPNVQTAYLGE 272 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 139/254 (54%), Gaps = 18/254 (7%) Query: 393 LKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEYD 452 L++ ++ +FG + + L + +G LIGPNG+GKST+ N+++G + + G + + Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 453 GRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVL------VGLHHTFNSNVVDVMVN 506 G I+G P I G++R+FQ +F ++ EN+ +G ++F + + Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGL--- 122 Query: 507 TPRYVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPSLLLLDE 566 Q +RA ++E +GL N EA L Y +QR LEIG + +LLLDE Sbjct: 123 --------QDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDE 174 Query: 567 PAAGLTAPDIKELVAIIRKIREAGITIILIEHHMDVVMSICDTVTVLDFGQKIAEGKPAQ 626 P AG++ + V +IRKI AG T++++EH MDVV + D + VL +G+ IA P Sbjct: 175 PTAGMSRSESDAAVELIRKI-SAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDN 233 Query: 627 VQADPKVIEAYLGS 640 ++ +P V +AYLG+ Sbjct: 234 IRNNPLVQQAYLGT 247 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 138 bits (348), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 88/264 (33%), Positives = 142/264 (53%), Gaps = 29/264 (10%) Query: 392 LLKVNQILMQFGGLKALNRVDLDVRKGTVHGLIGPNGSGKSTMMNVLTGIYRPTDGVVEY 451 LL QI +G AL+ VDL V +G ++GPNG+GK+T++NVLTG+++PT G V + Sbjct: 7 LLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGHVNF 66 Query: 452 DGRPISGNVPSAIALGGVARTFQNVQLFGEMTATENVLV-----------GLHHTFNSNV 500 DG I+G +A G+AR FQ +F E+T E + V G H F S Sbjct: 67 DGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGHLFGSRK 126 Query: 501 VDVMVNTPRYVREEQAARERAAAILEFVGLANLANEEARNLPYGKQRLLEIGRALGLNPS 560 ++ +V VR A GL+ + + +LP+G+++LL++ A L+P Sbjct: 127 INDIV-----VRTADA-----------FGLSPWLDTKGGSLPHGRRKLLDVASAFALHPK 170 Query: 561 LLLLDEPAAGLTAPDIKELV-AIIRKIREAGI-TIILIEHHMDVVMSICDTVTVLDFGQK 618 ++LLDEP AG++ D ++ ++R + GI I+L+EH MD+V + + G+K Sbjct: 171 VMLLDEPTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKK 230 Query: 619 IAEGKPAQVQADPKVIEAYLGSGA 642 IA+ + A+ +V+ +G GA Sbjct: 231 IADLPRDEFFANEEVVSIVVGKGA 254 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,325,177 Number of extensions: 52814 Number of successful extensions: 436 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 374 Number of HSP's successfully gapped: 67 Length of query: 655 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 566 Effective length of database: 891,988 Effective search space: 504865208 Effective search space used: 504865208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)