BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1644.p (383 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 98 9e-22 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 89 6e-19 gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 84 1e-17 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 75 9e-15 gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 66 4e-12 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 97.8 bits (242), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 157/352 (44%), Gaps = 33/352 (9%) Query: 4 KTQAFVAAALMSLALT---SQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 K+ +F+ L++ A T +Q +KIG++ P TG A G ++G +LAV E+N Sbjct: 2 KSSSFIFPILIASASTLVQAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKK 61 Query: 61 GVLG---RQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAK 117 V+G + +L+ DD A ++G +AQ + V A +G N+G A+ + R Y + Sbjct: 62 IVVGGKQLRFELLSEDDAADPKQGAAVAQRFCDLH-VNAVIGHTNSGTAIPAARIYHQCG 120 Query: 118 IPVINNVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTN 177 +P ++ AT +T K N FR A D A+ +A V+ K +A++ D + Sbjct: 121 LPNLSPSATSPELT----KSAYNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVVDDRSA 176 Query: 178 YGQLGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQI 237 YGQ + L + V V + N K VD +A L K AV G+ P+ + + Sbjct: 177 YGQGLADAFRTALRNTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAM 236 Query: 238 ANGMEKLNWHVPIIGSWPLSMGNFIDNSG--KNGNGARMPQTFIQD-------GNTPKRK 288 ME+L L+ FI G G R IQD G R Sbjct: 237 LRQMEQLG----------LTRQKFIGGDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRT 286 Query: 289 AFIEAYQKAYKVDRMPS--AVSAAQGYDSILLLAAAIKQAGSTDGEKVRAAL 338 A++K Y ++ P + YD++L +A A++ A S + +K A+ Sbjct: 287 TASRAWKKRYD-EKFPGQFQMHGPYSYDAVLAVAKAMQAANSVEPQKYLPAM 337 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 162/384 (42%), Gaps = 77/384 (20%) Query: 1 MTYKTQAFVAAAL---MSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEIN 57 M + + +AA + M A ++ A + IKIGV+ P TG A G + +G ++A +N Sbjct: 1 MNWHIKKSLAACIGLAMFAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVN 60 Query: 58 AAGGVLGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAK 117 GGVLG++IQLV D+++ V ++LI K+KV +G ++ LA E + Sbjct: 61 QNGGVLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYE 120 Query: 118 IPVINNVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIA------DEAVDKQKFSKVAI 171 +P++ A+ + IT + ++FRTS ++A+ + + A+ K F Sbjct: 121 VPLVVEAASSSKITTA----GNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADF----- 171 Query: 172 LADSTNYGQLGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIG 231 L + ++G + +K+L K + E D++AQL K G+ V Sbjct: 172 LVVNNDWGLGAAVEFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVF----- 226 Query: 232 PELAQIANGMEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDG--------N 283 + +G+E+L + + R+PQ I G Sbjct: 227 -----VTSGIEQLTLAI------------------RQAGEQRLPQRIITTGGAFPEPLLK 263 Query: 284 TPKRKAFI---------------------EAYQKAYKVDRMPSA--VSAAQGYDSILLLA 320 TP K ++ +A+ +K + A V +G+D+IL +A Sbjct: 264 TPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGWKSRGLELAGQVEGFRGFDAILTIA 323 Query: 321 AAIKQAGSTDGEKVRAALENLNTK 344 AIK AG + +R AL + K Sbjct: 324 EAIKLAGKAEPAAIRDALWKVQVK 347 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 147/315 (46%), Gaps = 32/315 (10%) Query: 1 MTYKTQ--AFVAAALMSLALTSQAADPI-KIGVSGPYTGGSAPMGVSMRDGVKLAVAEIN 57 M +KT+ A L++LA ++ A + I KIG GP TG A MG +G +LAV E+N Sbjct: 1 MQFKTKMIPLTGAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELN 60 Query: 58 AAGGVL-GRQIQL--VERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQ 114 A G V+ G++++L + DD A ++ A +L++ V +G +N+G + + R Y Sbjct: 61 AKGVVINGKKVKLQYMPEDDAADPKQATAAATKLVD-SNVAVVIGHLNSGATIPASRIYA 119 Query: 115 EAKIPVINNVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILAD 174 A I I+ +T T+Q K FR A D +++ AV VA++ D Sbjct: 120 NAGIVQISPSSTSPKYTQQGFKTA----FRVVANDAQLGRVLGQYAVKSLAAKNVAVIDD 175 Query: 175 STNYGQLGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQL--LKSKQ------GGAQAVL 226 T YGQ E+ K + T VA + N K D A L +K+K+ GG AV Sbjct: 176 RTAYGQGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVG 235 Query: 227 TYGIGPELAQIANGMEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQD--GNT 284 GP L Q M++L + +G + G+ G G G + + G Sbjct: 236 ----GPMLQQ----MKQLGINAKFMGGDGICTGSL---PGLAGAGLGENNVYCAEAGGVE 284 Query: 285 PKRKAFIEAYQKAYK 299 RKA ++ ++ AYK Sbjct: 285 DARKAGLDKFRAAYK 299 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 17/381 (4%) Query: 4 KTQAFVAAALMSL-ALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGV 62 K AA MSL ++T+ A D +KI GP TGG + +G+ R+ LAV NA Sbjct: 9 KAAVVCAAVGMSLLSMTASAKDVVKIAFVGPLTGGVSSIGLGGRNSADLAVRLRNADPKA 68 Query: 63 LGRQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVIN 122 QLV +DDE + GVQ+A ++ + +VA V + VA+ + Y +PVI Sbjct: 69 -KYTYQLVTQDDECRPNVGVQVATKIAADKSIVAGVTHFCSAVAMGTVGVYNRFGLPVI- 126 Query: 123 NVATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLG 182 G V+ + + R + Q+++ A + K + K AI+ D+T+YG+ Sbjct: 127 --VWGAVLPEITYGNDFKEVHRVNGTMINQSEVAAKFMISK-GYKKWAIIHDTTDYGKGH 183 Query: 183 REDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGME 242 + + + T ++ D T +L K ++ V G+ P +I ME Sbjct: 184 NKYFSEFVKKNGGTVLSTFGVTADQQDFTTELTKIRELKPDVVYFGGLTPLGVRIRTQME 243 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKA--FIEAYQKAYKV 300 KL G+ + +I G+ A +FI+ K F A + K Sbjct: 244 KLGIKAQFEGTSGIKSDAYIQGVGE--KVAEGSLSFIEGAPWEKIPGGLFFTAKYQLQKY 301 Query: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRAALENLNTKVEGVVTTYDKPFTHDD 360 P A + + L+ A+++ G D +KVR L V T T DD Sbjct: 302 SEPPEAYGPF-AFAAANLIMDAVEKVGP-DRKKVRDVLNQTKD-----VDTLIGKVTFDD 354 Query: 361 HEAIKASMVVMGEVKNGRVIL 381 H +V V++G+ ++ Sbjct: 355 HRQNIVPLVTKYVVEDGKWVI 375 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 111/210 (52%), Gaps = 8/210 (3%) Query: 9 VAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQ 68 VA L+ + +Q P+++G+ P G + +G GV+ A INAAGG+ GR+++ Sbjct: 26 VATGLLGMPAFAQN-KPLRVGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVE 84 Query: 69 LVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGT 128 LV +++ + + + ++L+ +EKV G +++GV+LA +++++P I T Sbjct: 85 LVIQEETSPKDT-IDRFRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFWDGTTQ 143 Query: 129 VITKQFEKEKDNYIFRTS--AADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDL 186 K+ K Y+FR++ + + A ++A + K KF ++A + +YG+ Sbjct: 144 DGVKE-TMPKPKYVFRSTDNECEAVMASLLAIKHF-KGKFKRIACVNPDYSYGRNTWTAF 201 Query: 187 EKVLADKKV-TPVAVEKYN-IKDVDMTAQL 214 + +L + V E+++ I ++D+T+ + Sbjct: 202 QALLKKYGIEHEVVSEQWSKIGNLDLTSNV 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 854,553 Number of extensions: 35514 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 6 Length of query: 383 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 298 Effective length of database: 906,776 Effective search space: 270219248 Effective search space used: 270219248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)