BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1642.p
         (558 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979873|ref|YP_001353168.1| electron-transferring-flavoprot...   943   0.0  

>gi|152979873|ref|YP_001353168.1| electron-transferring-flavoprotein
           dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 562

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/557 (80%), Positives = 505/557 (90%)

Query: 2   TSTQDLLAQYGPRESMEYDVVIVGGGPAGLSAAIRLKQLAAQQHREVAVCVLEKGSEVGA 61
           TS   LL QYGPRE+MEYDVVIVGGGPAGL+AAIRLKQLAA+++ EV+VC+LEKG E+GA
Sbjct: 6   TSDSSLLEQYGPREAMEYDVVIVGGGPAGLAAAIRLKQLAAEKNSEVSVCILEKGGELGA 65

Query: 62  HILSGAVMDPRALTELIPDWKEQGAPLHTPVSEDRFLFLSATKAYKTPNWLLPTCFQNHG 121
           HILSGAVMDP+A+TEL PDWKE+GAPL+T VSEDRFLFL+  KAYKT N++LP CFQNHG
Sbjct: 66  HILSGAVMDPQAITELFPDWKERGAPLNTAVSEDRFLFLTEKKAYKTLNFMLPACFQNHG 125

Query: 122 NYVISLSNVTRWLGQQAEALGVEIFPGFPAAEVLYHEDGSVKGVATGNLGINKEGEPTAE 181
           NYV+SL+NV RWLGQQAEALGVE+FPGFPAAE+LY++DGSVKGVATGN+G+N+ GEPTA 
Sbjct: 126 NYVVSLANVVRWLGQQAEALGVEVFPGFPAAEILYNDDGSVKGVATGNMGVNRAGEPTAA 185

Query: 182 FQLGMELHAKYTFFAEGARGHLGKQVIAKYQLDEGRDPQTYAIGIKELWEVKPEVHQPGL 241
           FQLGMELHAKYT FAEG+RG+LGKQ++ K++L+EG+ PQ+YAIGIKELWE+ P +HQPGL
Sbjct: 186 FQLGMELHAKYTLFAEGSRGNLGKQLLQKFKLEEGKAPQSYAIGIKELWEIDPALHQPGL 245

Query: 242 VVHTAGWPLPHDTYGGSFLYHLENNQVAVGYVVGLAYQNPYLSPFEEFQRYKTHPEIRKF 301
           V+HTAGWPL  DTYGGSFLYHLE+NQVAVGYVVGLAY+NPYLSPFEEFQRYKTHP I +F
Sbjct: 246 VIHTAGWPLASDTYGGSFLYHLEDNQVAVGYVVGLAYENPYLSPFEEFQRYKTHPAISRF 305

Query: 302 FEGGKRLSYGARAITAGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSGMLAAE 361
           FEGGKR+SYGARAITAGG+QSLPKLVFPGGAL+GCDAGFLNASRIKGSHAA+KSGM+AA+
Sbjct: 306 FEGGKRISYGARAITAGGLQSLPKLVFPGGALIGCDAGFLNASRIKGSHAAMKSGMMAAD 365

Query: 362 AAFQALGENRQGDELAAYPAAFDASWLKEELHKARNFKPSMSRGLVSGTLLVGIDQVLFG 421
           AAF AL E RQ DEL+ YP AF  SWL EELH ARNFKP MS+GL +G+L+VGIDQ++F 
Sbjct: 366 AAFVALNEGRQADELSDYPIAFKQSWLHEELHVARNFKPWMSKGLYTGSLMVGIDQLIFR 425

Query: 422 GKAPWTLRHTHADHECLRPASDFAPIAYPKPDGKLTFDRLSSVFISNTNHGEDQPAHLTL 481
           GKAPWTLR+THADH CLRPAS+F PI YPKPD KLTFDRLSSVFISNTNH EDQP HLTL
Sbjct: 426 GKAPWTLRNTHADHTCLRPASEFQPIVYPKPDNKLTFDRLSSVFISNTNHSEDQPIHLTL 485

Query: 482 KDKNVPVQINLAKYAGPEARYCPAGVYEFVKNEDHSDRLQINAQNCVHCKTCDIKDPTQN 541
           KD  VPVQ+NLA+YAGPE+RYCPA VYEFVK +   DRLQINAQNCVHCKTCDIKDPTQN
Sbjct: 486 KDPTVPVQVNLAQYAGPESRYCPAAVYEFVKTDAGEDRLQINAQNCVHCKTCDIKDPTQN 545

Query: 542 IVWVTPEGGGGPNYSGM 558
           IVWVTPEGGGGPNY  M
Sbjct: 546 IVWVTPEGGGGPNYPNM 562


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,489,229
Number of extensions: 67873
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 470
Effective length of database: 895,685
Effective search space: 420971950
Effective search space used: 420971950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)